Gene omics information

Query gene ID	Contig6616_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.57	74.9	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	S.X.	H.G.	Please select
0.46	61.0	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.44	58.9	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	S.X.	H.G.	Please select
0.40	53.1	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	S.X.	H.G.	Please select
0.25	28.9	Contig3727_at	Contig3727	-	-	5e-66	At3g62560	GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.8	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
38.5	99.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
29.3	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	4e-154	543	Contig6617_at	Contig6617	-	-	5e-48	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.02	6e-2	38	HVSMEk0004M15r2_at	HVSMEk0004M15r2	-	-	3e-1	At4g27940	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.08	2e-1	36	S0000800167F09F1_at	S0000800167F09F1	-	-	3e+0	At3g58840	-	C.G.	S.X.	Please select
0.02	1e+0	34	Contig15525_at	Contig15525	-	-	2e+0	At1g31520	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig3176_at	Contig3176	-	-	1e-18	At3g51800	ATG2	C.G.	S.X.	Please select
0.02	1e+0	34	Contig20048_at	Contig20048	-	-	6e-3	At5g41810	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6774_at	Contig6774	-	-	2e-34	At5g61960	AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig9132_at	Contig9132	-	-	9e-2	At1g71750	phosphoribosyltransferase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	1e-57	224	Arabidopsis thaliana	At4g35260	829679	IDH1 (ISOCITRATE DEHYDROGENASE 1)	NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	5e-48	192	Glycine max	Gma.7096.1.S1_at	AW348739	-	-	1e-42	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.50	0	872	Oryza sativa	Os04g0479200	AK072524.1	-	NAD-dependent isocitrate dehydrogenase precursor(EC 1.1.1.41)	3e-77	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	1e-42	174	Populus trichocarpa	PtpAffx.249.262.A1_a_at	CV242035	-	-	1e-75	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	1100	Triticum aestivum	Ta.9737.2.S1_a_at	CK212278	-	-	1e-33	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.07	3e-9	61	Vitis vinifera	1618945_at	CF214077	hypothetical protein LOC100253697	-	1e-25	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.57	2e-180	630	Zea mays	Zm.14993.1.A1_at	AY104383.1	NAD-dependent isocitrate dehydrogenase	-	1e-47	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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