Gene omics information

Query gene ID	Contig6604_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig6604_s_at	Contig6604	-	-	1e-4	At1g18100	E12A11	S.X.	H.G.	Please select
0.50	66.9	Contig5213_at	Contig5213	-	-	2e-11	At5g61020	ECT3	S.X.	H.G.	Please select
0.47	62.2	Contig4193_at	Contig4193	-	-	1e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	S.X.	H.G.	Please select
0.43	56.4	Contig336_at	Contig336	-	-	4e-1	At5g66580	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig8442_at	Contig8442	-	-	5e-24	At1g34470	permease-related	S.X.	H.G.	Please select
0.38	49.5	Contig333_3_x_at	Contig333_3	-	-	0			S.X.	H.G.	Please select
0.35	45.1	Contig8857_at	Contig8857	-	-	4e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please select
0.33	42.6	Contig1353_s_at	Contig1353	-	-	1e-1	At4g11300	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig15062_at	Contig15062	-	-	1e-1	At4g25440	ZFWD1 (zinc finger WD40 repeat protein 1)	S.X.	H.G.	Please select
0.32	40.3	Contig3470_at	Contig3470	-	-	1e-11	At2g37340	RSZ33	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.7	100.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
36.3	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
34.2	99.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
34.1	99.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
30.5	99.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.3	99.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
25.2	99.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.4	99.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1606	Contig6604_at	Contig6604	-	-	1e-4	At1g18100	E12A11	C.G.	S.X.	Please select
0.24	3e-37	155	Contig5005_at	Contig5005	-	-	3e-5	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.05	5e-2	38	Contig26350_at	Contig26350	-	-	2e+0	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig13490_at	Contig13490	-	-	4e-10	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	EBro08_SQ005_L04_at	EBro08_SQ005_L04	-	-	3e+0	At3g20910	NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)	C.G.	S.X.	Please select
0.02	8e-1	34	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig12449_at	Contig12449	-	-	3e-10	At2g16400	BLH7 (bell1-like homeodomain 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-4	48	Arabidopsis thaliana	At1g18100	838390	E12A11	E12A11 protein (E12A11)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-4	48	Glycine max	Gma.6921.1.S1_at	BE823209	-	-	4e-4	At1g18100	E12A11	C.G.	S.X.	Please select
0.41	6e-42	173	Oryza sativa	Os06g0498800	AK107056.1	-	MOTHER of FT and TF1 protein	4e-1	At1g18100	E12A11	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	6e-1	36	Populus trichocarpa	Ptp.3985.1.S1_at	AB181241.1	hypothetical protein	-	2e-5	At1g18100	E12A11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	827	Triticum aestivum	Ta.10074.1.S1_at	BJ243068	-	-	4e-4	At1g18100	E12A11	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1612551_at	CF605967	hypothetical protein LOC100251825	-	4e+0	At3g19650	cyclin-related	C.G.	S.X.	Please select
0.41	2e-44	178	Zea mays	Zm.15564.1.A1_at	CD446261	ZCN11 protein	-	5e-1	At1g18100	E12A11	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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