Gene omics information

Query gene ID	Contig6581_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	S.X.	H.G.	Please select
0.92	98.4	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.83	94.0	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	S.X.	H.G.	Please select
0.73	88.7	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.67	84.7	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.61	78.7	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.4	99.8	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
19.8	99.7	GSM71149	OWB-R unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
19.1	99.7	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.7	99.7	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
17.6	99.6	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
17.3	99.6	GSM71157	Steptoe stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.7	99.5	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
13.9	99.5	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
12.8	99.4	GSM71159	Steptoe stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
12.5	99.4	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	648	Contig7389_at	Contig7389	-	-	1e-2	At3g26180	CYP71B20	C.G.	S.X.	Please select
0.41	1e-53	210	Contig11957_at	Contig11957	-	-	5e-2	At3g48280	CYP71A25	C.G.	S.X.	Please select
0.08	7e-9	61	HV_CEb0003J19r2_at	HV_CEb0003J19r2	-	-	4e+0	At3g46086	unknown protein	C.G.	S.X.	Please select
0.05	4e-4	46	Contig26116_at	Contig26116	-	-	1e+0	At3g26300	CYP71B34	C.G.	S.X.	Please select
0.04	3e-2	40	Contig18990_at	Contig18990	-	-	7e+0	At5g40600	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	HVSMEb0012I19r2_at	HVSMEb0012I19r2	-	-	2e+0	At1g68310	vacuolar sorting signal binding	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4935_at	Contig4935	-	-	1e-4	At5g11650	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig13333_at	Contig13333	-	-	1e-2	At2g43795	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	40	Arabidopsis thaliana	At3g26330	822237	CYP71B37	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.6452.1.S1_at	CA937281	-	-	3e-3	At4g37320	CYP81D5	C.G.	S.X.	Please select
0.13	5e-13	77	Oryza sativa	Os06g0325900	9634.m02158	-	Cytochrome P450 71C4 (EC 1.14.-.-)	8e-4	At4g31500	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+1	32	Populus trichocarpa	PtpAffx.83582.1.S1_at	BP930267	hypothetical protein	-	1e-1	At5g67310	CYP81G1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	5e-33	143	Triticum aestivum	Ta.13382.1.S1_at	CD918545	-	-	2e+0	At3g48290	CYP71A24	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1610116_at	CF208012	-	-	1e+0	At2g38890	unknown protein	C.G.	S.X.	Please select
0.05	2e-3	44	Zea mays	Zm.5558.1.A1_at	AY072298.1	-	-	3e-1	At3g20100	CYP705A19	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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