CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6578_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig6578_at Contig6578 - - 1e-27 At1g64650 - S.X. H.G.
0.83 94.0 Contig4058_s_at Contig4058 - - 2e+0 At5g42070 unknown protein S.X. H.G.
0.81 92.8 Contig4999_at Contig4999 - - 6e-3 At3g22750 protein kinase, putative S.X. H.G.
0.78 91.2 HV09N10u_s_at HV09N10u - - 3e+0 At1g05450 protease inhibitor/seed storage/lipid transfer protein (LTP)-related S.X. H.G.
0.78 91.2 Contig4061_at Contig4061 - - 2e-2 At4g17670 senescence-associated protein-related S.X. H.G.
0.75 89.5 Contig5976_s_at Contig5976 - - 4e-58 At4g39520 GTP-binding protein, putative S.X. H.G.
0.71 87.1 Contig3638_at Contig3638 - - 7e-9 At5g21090 leucine-rich repeat protein, putative S.X. H.G.
0.70 86.0 Contig590_at Contig590 - - 1e+0 At4g09840 unknown protein S.X. H.G.
0.67 84.7 HVSMEn0025K09r2_at HVSMEn0025K09r2 - - 8e-1 At2g21650 MEE3 (MATERNAL EFFECT EMBRYO ARREST 3) S.X. H.G.
0.64 80.9 Contig13634_at Contig13634 - - 1e+0 At4g33565 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 99.4 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
11.6 99.3 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
11.2 99.2 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
10.9 99.2 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2 99.1 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
10.2 99.1 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
9.9 99.1 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
9.2 99.0 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
9.0 98.9 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
8.7 98.9 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 0 668 Contig9327_at Contig9327 - - 3e-34 At1g64650 - C.G. S.X.
0.02 1e-4 48 Contig26028_at Contig26028 - - 5e-3 At2g01340 unknown protein C.G. S.X.
0.02 5e-4 46 Contig7939_at Contig7939 - - 2e-34 At4g25550 protein binding C.G. S.X.
0.02 5e-4 46 Contig6064_at Contig6064 - - 5e-16 At5g50870 UBC27 (ubiquitin-conjugating enzyme 27) C.G. S.X.
0.02 5e-4 46 Contig22184_at Contig22184 - - 5e+0 At5g56070 unknown protein C.G. S.X.
0.02 2e-3 44 Contig6817_at Contig6817 - - 2e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.02 8e-3 42 Contig10682_at Contig10682 - - 5e-1 At3g51010 unknown protein C.G. S.X.
0.02 8e-3 42 Contig327_s_at Contig327 - - 2e-2 At2g23310 ATRER1C1 C.G. S.X.
0.02 3e-2 40 Contig17523_at Contig17523 - - 7e-2 At4g08230 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 1e-27 125 Arabidopsis thaliana At1g64650 842773 - F:unknown;P:unknown;C:plasma membrane;BPMOFA - - - C.G. S.X.
0.12 2e-45 184 Glycine max Gma.7433.1.S1_at BM093327 - - 5e-32 At1g64650 - C.G. S.X.
0.60 0 1197 Oryza sativa Os03g0114800 AK065394.1 - Protein of unknown function DUF791 family protein 1e-33 At1g64650 - C.G. S.X.
0.23 5e-28 127 Populus trichocarpa PtpAffx.5661.2.S1_s_at CV228504 hypothetical protein - 6e-113 At4g27720 - C.G. S.X.
0.69 0 1877 Triticum aestivum Ta.1382.1.S1_x_at BQ237866 - - 8e-23 At1g64650 - C.G. S.X.
0.14 6e-27 121 Vitis vinifera 1606868_at CF214473 hypothetical protein LOC100267516 - 1e-44 At4g27720 - C.G. S.X.
0.22 4e-75 282 Zea mays Zm.2962.1.S1_at CF045165 hypothetical protein LOC100272424 - 7e-18 At4g27720 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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