Gene omics information

Query gene ID	Contig6527_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.3	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	S.X.	H.G.	Please select
0.53	69.7	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	S.X.	H.G.	Please select
0.50	66.9	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	S.X.	H.G.	Please select
0.39	50.5	Contig15220_at	Contig15220	-	-	5e-1	At1g43010	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.30	37.0	Contig1788_at	Contig1788	-	-	8e-27	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.22	24.2	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
57.0	100.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
39.1	99.9	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
26.6	99.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.0	98.4	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6	98.2	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Contig8902_s_at	Contig8902	-	-	2e+0	At5g06750	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8160_at	Contig8160	-	-	2e-4	At4g23860	PHD finger protein-related	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5765_at	Contig5765	-	-	8e-35	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5770_s_at	Contig5770	-	-	5e-42	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select
0.02	2e+0	34	HA25J20r_at	HA25J20r	-	-	3e+0	At3g05741	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.00	2e+0	34	Contig21662_at	Contig21662	-	-	1e+0	At5g11160	APT5 (Adenine phosphoribosyltransferase 5)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig10657_at	Contig10657	-	-	2e+0	At4g33310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At3g07350	819923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	Gma.5642.1.S1_at	AW278080	-	-	8e-1	At5g21110	unknown protein	C.G.	S.X.	Please select
0.50	0	797	Oryza sativa	Os04g0661300	AK103942.1	-	Conserved hypothetical protein	8e-1	At1g12390	cornichon family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.223489.1.S1_s_at	pmrna41520	hypothetical protein	-	3e-44	At4g02070	MSH6 (MUTS HOMOLOG 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	1e-126	454	Triticum aestivum	TaAffx.105866.1.S1_at	CA646951	-	-	5e-1	At3g61840	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1617928_at	CB340542	hypothetical protein LOC100247720	-	6e-2	At3g62910	APG3 (ALBINO AND PALE GREEN)	C.G.	S.X.	Please select
0.17	2e-48	192	Zea mays	Zm.2583.1.S1_at	CN845475	ATP/GTP binding protein	-	8e+0	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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