Gene omics information

Query gene ID	Contig6491_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.59	75.8	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig8059_at	Contig8059	-	-	8e-18	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	S.X.	H.G.	Please select
0.48	63.2	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.47	62.2	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.47	62.2	Contig24772_at	Contig24772	-	-	1e-4	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.7	99.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.7	99.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
13.2	99.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.2	99.4	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.9	99.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.5	99.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.1	99.2	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.0	99.2	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.0	99.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	6e-55	214	EBpi01_SQ005_P17_at	EBpi01_SQ005_P17	-	-	2e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.03	9e-8	57	Contig4956_at	Contig4956	-	-	2e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	C.G.	S.X.	Please select
0.03	9e-8	57	Contig4955_s_at	Contig4955	-	-	2e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	C.G.	S.X.	Please select
0.02	5e-3	42	Contig11406_at	Contig11406	-	-	3e-1	At4g16790	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig10775_at	Contig10775	-	-	2e-6	At1g05805	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Contig9252_at	Contig9252	-	-	2e-47	At4g38620	MYB4	C.G.	S.X.	Please select
0.07	2e-2	40	HW02N11u_at	HW02N11u	-	-	2e-4	At5g59480	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Contig8611_at	Contig8611	-	-	1e-21	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Contig5978_at	Contig5978	-	-	2e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-1	36	Arabidopsis thaliana	At5g02230	831784	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-2	40	Glycine max	Gma.5513.1.S1_at	AW310453	-	-	3e-15	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.45	2e-91	337	Oryza sativa	Os01g0973000	NM_189475.1	-	Pyrimidine 5-nucleotidase family protein	1e-1	At5g59490	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	PtpAffx.219184.1.S1_at	pmrna35034	-	-	6e+0	At5g61110	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	827	Triticum aestivum	Ta.3251.1.A1_at	BJ254301	grip21 protein	-	2e+0	At2g14900	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.04	3e-3	42	Vitis vinifera	1609963_at	CF514599	hypothetical protein LOC100245055	-	9e-8	At5g59480	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.46	7e-70	264	Zea mays	Zm.1739.1.A1_at	BM337820	catalytic/ hydrolase	-	1e-1	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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