Gene omics information

Query gene ID	Contig6470_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	94.5	Contig6470_at	Contig6470	-	-	1e-3	At5g55290	ATP synthase subunit H family protein	S.X.	H.G.	Please select
0.47	62.2	Contig7028_at	Contig7028	-	-	7e-1	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	S.X.	H.G.	Please select
0.44	58.9	Contig6456_s_at	Contig6456	-	-	4e+0	At3g16120	dynein light chain, putative	S.X.	H.G.	Please select
0.38	49.5	Contig6182_at	Contig6182	-	-	5e-5	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.38	49.5	Contig5487_s_at	Contig5487	-	-	3e-1	At5g65207	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig6801_at	Contig6801	-	-	9e-2	At1g65270	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig13457_s_at	Contig13457	-	-	6e-9	At4g01150	unknown protein	S.X.	H.G.	Please select
0.32	40.3	HVSMEm0018N06r2_at	HVSMEm0018N06r2	-	-	4e+0	At5g50000	protein kinase, putative	S.X.	H.G.	Please select
0.31	38.6	Contig20000_s_at	Contig20000	-	-	1e+1	At5g21430	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.30	37.0	Contig11763_at	Contig11763	-	-	7e-2	At4g09270	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.1	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Contig5793_at	Contig5793	-	-	1e-1	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig9788_at	Contig9788	-	-	5e-1	At1g08845	structural constituent of ribosome	C.G.	S.X.	Please select
0.04	5e-1	34	HC02F11_T3_at	HC02F11_T3	-	-	3e+0	At3g50470	HR3 (HOMOLOG OF RPW8 3)	C.G.	S.X.	Please select
0.03	5e-1	34	Contig21804_at	Contig21804	-	-	4e+0	At5g28610	-	C.G.	S.X.	Please select
0.02	5e-1	34	Contig14644_at	Contig14644	-	-	2e-1	At3g58200	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig5794_s_at	Contig5794	-	-	7e-3	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig873_s_at	Contig873	-	-	2e-121	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig609_at	Contig609	-	-	7e+0	At2g04420	nucleic acid binding	C.G.	S.X.	Please select
0.02	2e+0	32	Contig24807_at	Contig24807	-	-	7e-13	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-3	44	Arabidopsis thaliana	At5g55290	835622	ATP synthase subunit H family protein	F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-2	40	Glycine max	GmaAffx.92523.1.S1_at	CF808248	-	-	7e-8	At4g26710	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.40	8e-37	155	Oryza sativa	Os04g0660600	AK120899.1	-	ATP synthase subunit H family protein	3e-10	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-3	44	Populus trichocarpa	PtpAffx.50507.1.A1_s_at	CV247777	-	-	2e-18	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	3e-152	537	Triticum aestivum	Ta.5109.1.S1_a_at	CA713571	Plasma membrane H+-ATPase subunit H	-	5e-3	At4g26710	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.10	2e-5	48	Vitis vinifera	1612654_at	CA809225	hypothetical protein LOC100256926	-	3e-19	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.25	2e-28	125	Zea mays	Zm.1052.1.A1_at	BM334713	-	-	2e+0	At5g53610	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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