Gene omics information

Query gene ID	Contig6446_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig6446_at	Contig6446	-	-	5e-1	At1g29680	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig12051_at	Contig12051	-	-	3e+0	At5g12340	unknown protein	S.X.	H.G.	Please select
0.70	86.0	Contig20078_at	Contig20078	-	-	1e-1	At4g33850	glycosyl hydrolase family 10 protein	S.X.	H.G.	Please select
0.67	84.7	Contig20050_at	Contig20050	-	-	4e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	S.X.	H.G.	Please select
0.59	75.8	Contig3289_at	Contig3289	-	-	1e-1	At2g24762	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	S.X.	H.G.	Please select
0.58	74.9	Contig18789_at	Contig18789	-	-	8e-2	At1g79310	AtMC7 (metacaspase 7)	S.X.	H.G.	Please select
0.58	74.9	HB16L13r_x_at	HB16L13r	-	-	1e+0	At3g62907	unknown protein	S.X.	H.G.	Please select
0.56	74.3	Contig328_at	Contig328	-	-	2e+0	At3g49300	proline-rich family protein	S.X.	H.G.	Please select
0.56	74.3	Contig3287_x_at	Contig3287	-	-	6e+0	At3g15780	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig2010_at	Contig2010	-	-	1e-10	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
89.2	100.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
80.8	100.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
56.6	100.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
40.9	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
34.7	99.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
22.1	99.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
19.9	99.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.0	97.2	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	0	753	Contig6445_s_at	Contig6445	-	-	1e-1	At2g20920	unknown protein	C.G.	S.X.	Please select
0.70	0	753	Contig6445_at	Contig6445	-	-	1e-1	At2g20920	unknown protein	C.G.	S.X.	Please select
0.13	4e-31	135	Contig26057_at	Contig26057	-	-	4e-1	At1g48620	HON5 (High Mobility Group Family A 5)	C.G.	S.X.	Please select
0.06	1e-6	54	Contig3594_at	Contig3594	-	-	7e-3	At2g31985	unknown protein	C.G.	S.X.	Please select
0.07	4e-3	42	Contig11678_at	Contig11678	-	-	6e+0	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig14199_at	Contig14199	-	-	8e-6	At3g53450	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig1846_s_at	Contig1846	-	-	9e-29	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig8840_at	Contig8840	-	-	4e-1	At3g55680	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig6309_at	Contig6309	-	-	6e-1	At5g66815	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At1g29680	839845	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	PsAffx.CL584Contig1_s_at	PsAffx.CL584Contig1	-	-	4e+0	At4g36500	unknown protein	C.G.	S.X.	Please select
0.47	0	698	Oryza sativa	Os01g0749000	AK107265.1	-	Protein of unknown function DUF1264 family protein	7e-1	At1g29680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.217631.1.S1_at	pmrna32977	hypothetical protein	-	1e+1	At1g74045	TET17 (TETRASPANIN 17)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	1324	Triticum aestivum	Ta.27704.1.S1_at	CD910590	-	-	2e+0	At1g29680	unknown protein	C.G.	S.X.	Please select
0.10	7e-4	44	Vitis vinifera	1613370_at	CB346796	hypothetical protein LOC100246418	-	5e-4	At1g29680	unknown protein	C.G.	S.X.	Please select
0.06	4e-3	42	Zea mays	Zm.13983.1.S1_at	AY106294.1	hypothetical protein LOC100193701	-	3e-2	At2g31985	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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