CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6442_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig6442_at Contig6442 - - 2e-1 At2g38920 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related S.X. H.G.
0.75 89.5 EBro08_SQ011_O23_at EBro08_SQ011_O23 - - 1e+0 At1g03430 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5) S.X. H.G.
0.74 89.1 HD03N13u_at HD03N13u - - 2e+1 At5g42591 unknown protein S.X. H.G.
0.69 85.5 Contig25667_x_at Contig25667 - - 7e-1 At1g24000 Bet v I allergen family protein S.X. H.G.
0.67 84.7 Contig16230_at Contig16230 - - 1e+0 At3g17280 F-box family protein S.X. H.G.
0.66 81.5 Contig26035_at Contig26035 - - 2e+0 At1g10600 - S.X. H.G.
0.66 81.5 HS05N06r_at HS05N06r - - 9e-1 At1g79110 protein binding / zinc ion binding S.X. H.G.
0.66 81.5 2623978_R_1403-2212_at 2623978_R_1403-2212 - - 2e+0 At3g16350 myb family transcription factor S.X. H.G.
0.66 81.5 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein S.X. H.G.
0.65 81.4 Contig23664_at Contig23664 - - 1e+0 At3g51080 zinc finger (GATA type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.8 GSM398282 Moroc9-75_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1 96.2 GSM398281 Moroc9-75_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4 94.8 GSM363463 5 mM B(OH)3 treatment (5B) - rep1 GSE14521 Late response to boron toxicity in barley leaves
3.2 94.3 GSM363465 5 mM B(OH)3 treatment (5B) - rep3 GSE14521 Late response to boron toxicity in barley leaves
3.1 94.1 GSM398277 Moroc9-75_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.9 93.4 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
2.7 92.7 GSM440961 Stressed lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
2.6 92.3 GSM372962 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 0 1297 Contig6441_s_at Contig6441 - - 9e-2 At5g25540 CID6 (CTC-Interacting Domain 6) C.G. S.X.
0.01 1e-1 38 Contig21569_at Contig21569 - - 1e+0 At2g23040 unknown protein C.G. S.X.
0.01 4e-1 36 Contig14224_at Contig14224 - - 1e+0 At4g03965 protein binding / zinc ion binding C.G. S.X.
0.01 4e-1 36 Contig11542_at Contig11542 - - 2e+0 At3g19880 F-box family protein C.G. S.X.
0.01 2e+0 34 EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+0 34 Contig3841_at Contig3841 - - 3e-12 At5g42050 - C.G. S.X.
0.00 2e+0 34 Contig21662_at Contig21662 - - 1e+0 At5g11160 APT5 (Adenine phosphoribosyltransferase 5) C.G. S.X.
0.01 2e+0 34 Contig11856_at Contig11856 - - 3e-6 At4g28500 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) C.G. S.X.
0.01 2e+0 34 Contig20125_at Contig20125 - - 3e+0 At3g05540 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 38 Arabidopsis thaliana At2g38920 818477 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.C12000048_at PsAffx.C12000048 - - 4e-3 At5g63650 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) C.G. S.X.
0.46 6e-62 240 Oryza sativa Os12g0612100 AK101614.1 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.204556.1.S1_x_at pmrna8951 SAUR family protein - 3e-5 At4g38840 auxin-responsive protein, putative C.G. S.X.
0.71 0 1877 Triticum aestivum Ta.28166.2.S1_a_at CA640004 - - 8e-1 At4g05370 - C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1611721_s_at CF414152 - - 1e+0 At1g35460 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.12645.1.S1_at BU097696 - - 4e-4 At4g17670 senescence-associated protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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