CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6433_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.3 Contig6433_at Contig6433 - - 5e-1 At5g66460 (1-4)-beta-mannan endohydrolase, putative S.X. H.G.
0.83 94.0 Contig6431_at Contig6431 - - 3e-1 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative S.X. H.G.
0.55 72.0 HVSMEb0006I05f_x_at HVSMEb0006I05f - - 8e-1 At5g19930 integral membrane family protein S.X. H.G.
0.47 62.2 Contig5728_at Contig5728 - - 1e-15 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) S.X. H.G.
0.22 24.2 Contig6836_at Contig6836 - - 6e-11 At1g27650 ATU2AF35A S.X. H.G.
0.22 24.2 Contig9794_at Contig9794 - - 4e-1 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.4 100.0 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
56.6 100.0 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
25.5 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
24.7 99.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
24.3 99.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
19.8 99.7 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
14.9 99.5 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
14.6 99.5 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.9 99.4 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
11.5 99.3 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 3e-161 567 HY04F23u_s_at HY04F23u - - 3e+0 At3g14890 phosphoesterase C.G. S.X.
0.51 3e-161 567 HY04F23u_at HY04F23u - - 3e+0 At3g14890 phosphoesterase C.G. S.X.
0.22 3e-34 145 HS06P18u_at HS06P18u - - 5e-1 At3g22630 PBD1 (20S PROTEASOME BETA SUBUNIT D1) C.G. S.X.
0.02 4e-3 42 Contig10084_at Contig10084 - - 5e-2 At5g66460 (1-4)-beta-mannan endohydrolase, putative C.G. S.X.
0.02 2e-1 36 Contig11100_at Contig11100 - - 6e-10 At4g34950 nodulin family protein C.G. S.X.
0.02 9e-1 34 Contig5377_at Contig5377 - - 8e-1 At4g36250 ALDH3F1 (Aldehyde Dehydrogenase 3F1) C.G. S.X.
0.03 9e-1 34 HB25K10r_at HB25K10r - - 3e+0 At2g33550 gt-2-related C.G. S.X.
0.02 9e-1 34 Contig5376_at Contig5376 - - 3e+0 At3g44950 glycine-rich protein C.G. S.X.
0.02 9e-1 34 Contig4387_at Contig4387 - - 6e-1 At5g04160 phosphate translocator-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-1 36 Arabidopsis thaliana At5g66460 836778 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA - - - C.G. S.X.
0.09 1e-5 52 Glycine max GmaAffx.7838.3.S1_at CA800410 - - 8e-4 At5g66460 (1-4)-beta-mannan endohydrolase, putative C.G. S.X.
0.45 3e-136 486 Oryza sativa Os.10006.2.S1_x_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.217350.1.S1_at pmrna32572 hypothetical protein - 2e-2 At4g22080 pectate lyase family protein C.G. S.X.
0.60 0 1193 Triticum aestivum Ta.9612.1.S1_at CD886109 - - 4e-3 At5g66460 (1-4)-beta-mannan endohydrolase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621162_at CF569220.1 - - 3e-17 At4g29890 choline monooxygenase, putative (CMO-like) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.9047.1.A1_at BM266786 - - 2e+0 At5g25840 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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