Gene omics information

Query gene ID	Contig6431_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig6431_at	Contig6431	-	-	3e-1	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	S.X.	H.G.	Please select
0.67	84.7	HVSMEb0006I05f_x_at	HVSMEb0006I05f	-	-	8e-1	At5g19930	integral membrane family protein	S.X.	H.G.	Please select
0.61	78.7	Contig2718_s_at	Contig2718	-	-	4e-27	At3g25230	ROF1 (ROTAMASE FKBP 1)	S.X.	H.G.	Please select
0.56	74.3	Contig6433_at	Contig6433	-	-	5e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	S.X.	H.G.	Please select
0.53	69.7	Contig5728_at	Contig5728	-	-	1e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	S.X.	H.G.	Please select
0.22	24.2	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	S.X.	H.G.	Please select
0.22	24.2	Contig6836_at	Contig6836	-	-	6e-11	At1g27650	ATU2AF35A	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
168.5	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
130.5	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
103.9	100.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM398269	HS41-1_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
0.0	29.9	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-5	48	Contig9955_at	Contig9955	-	-	3e-1	At2g23310	ATRER1C1	C.G.	S.X.	Please select
0.01	2e-1	36	Contig2712_at	Contig2712	-	-	6e-2	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9659_at	Contig9659	-	-	7e-2	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig3234_s_at	Contig3234	-	-	1e+0	At1g12810	proline-rich family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig3233_at	Contig3233	-	-	2e+0	At1g12810	proline-rich family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig2710_s_at	Contig2710	-	-	2e+0	At2g26590	adhesion regulating molecule family	C.G.	S.X.	Please select
0.02	6e-1	34	Contig10312_at	Contig10312	-	-	4e-1	At4g36130	60S ribosomal protein L8 (RPL8C)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig9313_at	Contig9313	-	-	3e-7	At1g26230	chaperonin, putative	C.G.	S.X.	Please select
0.01	6e-1	34	Contig8746_at	Contig8746	-	-	1e-37	At3g08930	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At2g18110	816323	elongation factor 1-beta, putative / EF-1-beta, putative	F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	GmaAffx.28996.1.A1_at	BU548388	-	-	2e-5	At5g04190	PKS4 (phytochrome kinase substrate 4)	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.7917.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.201336.1.S1_at	pmrna2651	hypothetical protein	-	8e-1	At5g34882	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	7e-95	347	Triticum aestivum	Ta.28020.1.S1_x_at	Z50867.1	pollen allergen-like protein	-	5e+0	At3g04945	LCR18 (Low-molecular-weight cysteine-rich 18)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622454_at	CF413990	hypothetical protein LOC100246221	-	2e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.17637.1.S1_at	CK368490	-	-	5e+0	At2g22450	riboflavin biosynthesis protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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