Gene omics information

Query gene ID	Contig642_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	S.X.	H.G.	Please select
0.61	78.7	Contig6545_at	Contig6545	-	-	1e-2	At1g14250	nucleoside phosphatase family protein / GDA1/CD39 family protein	S.X.	H.G.	Please select
0.61	78.7	Contig6546_at	Contig6546	-	-	8e+0	At5g02780	In2-1 protein, putative	S.X.	H.G.	Please select
0.50	66.9	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	S.X.	H.G.	Please select
0.44	58.9	Contig5361_at	Contig5361	-	-	3e+0	At4g29103	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig660_s_at	Contig660	-	-	1e-37	At1g09200	histone H3	S.X.	H.G.	Please select
0.36	47.1	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	93.8	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.7	92.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.4	91.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.4	91.4	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.3	90.9	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-14	79	Contig966_s_at	Contig966	-	-	4e+0	At5g53530	VPS26A (VACUOLAR PROTEIN SORTING 26A)	C.G.	S.X.	Please select
0.05	2e-14	79	Contig966_at	Contig966	-	-	4e+0	At5g53530	VPS26A (VACUOLAR PROTEIN SORTING 26A)	C.G.	S.X.	Please select
0.05	5e-12	71	Contig934_x_at	Contig934	-	-	9e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.06	5e-12	71	rbaal24m19_at	rbaal24m19	-	-	5e-1	At4g36600	-	C.G.	S.X.	Please select
0.06	5e-12	71	HM09E06r_at	HM09E06r	-	-	9e-10	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.06	5e-12	71	S0001000018F11F1_x_at	S0001000018F11F1	-	-	8e-1	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.05	5e-12	71	Contig626_x_at	Contig626	-	-	4e-16	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.06	5e-12	71	Contig346_at	Contig346	-	-	1e-7	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.06	5e-12	71	S0001000018F11F1_at	S0001000018F11F1	-	-	8e-1	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-5	50	Arabidopsis thaliana	At4g08930	826471	ATAPRL6 (APR-like 6)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-6	54	Glycine max	GmaAffx.37857.1.S1_at	BF008702	-	-	4e-3	At1g34780	ATAPRL4 (APR-like 4)	C.G.	S.X.	Please select
0.54	4e-102	373	Oryza sativa	OsAffx.7801.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-4	46	Populus trichocarpa	PtpAffx.28128.1.S1_at	DN500089	hypothetical protein	-	3e-14	At1g34780	ATAPRL4 (APR-like 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	0	904	Triticum aestivum	Ta.25425.2.S1_a_at	BE217040	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	C.G.	S.X.	Please select
0.04	2e-4	46	Vitis vinifera	1622388_at	CF568932	-	-	4e-3	At1g34780	ATAPRL4 (APR-like 4)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	ZmAffx.543.1.S1_at	AI712085	-	-	3e+0	At4g03510	RMA1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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