Gene omics information

Query gene ID	Contig6402_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig6402_at	Contig6402	-	-	4e-1	At1g65710	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Z48624_x_at	Z48624	-	-	5e-4	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.23	26.1	Contig8708_at	Contig8708	-	-	2e-1	At5g50790	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.17	16.9	Contig10871_at	Contig10871	-	-	8e-6	At3g16090	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.15	14.1	HZ65O04r_at	HZ65O04r	-	-	4e-6	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	S.X.	H.G.	Please select
0.07	5.8	HW08A07u_at	HW08A07u	-	-	4e-1	At5g36805	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.2	96.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	666	HA10G16u_s_at	HA10G16u	-	-	8e-1	At5g14440	-	C.G.	S.X.	Please select
0.51	6e-119	426	HVSMEn0015D17r2_x_at	HVSMEn0015D17r2	-	-	4e-2	At5g36662	-	C.G.	S.X.	Please select
0.04	9e-7	54	HW05D06V_at	HW05D06V	-	-	1e+0	At3g55420	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig21940_at	Contig21940	-	-	4e-1	At5g54460	wound-responsive protein-related	C.G.	S.X.	Please select
0.01	5e-2	38	Contig18045_at	Contig18045	-	-	8e-1	At1g15900	unknown protein	C.G.	S.X.	Please select
0.01	5e-2	38	Contig7434_at	Contig7434	-	-	6e-2	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.01	2e-1	36	Contig3489_at	Contig3489	-	-	4e+0	At3g13882	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	8e-1	34	Contig7642_at	Contig7642	-	-	1e-6	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig15757_at	Contig15757	-	-	3e-3	At3g50930	BCS1 (CYTOCHROME BC1 SYNTHESIS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At1g65710	842882	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-2	40	Glycine max	Gma.4104.1.S1_at	BI701259	-	-	1e+0	At4g00280	-	C.G.	S.X.	Please select
0.37	4e-132	472	Oryza sativa	Os06g0342100	U19030.1	-	Ribonucleoprotein complex SRP, Srp19 componentfamily protein	1e-1	At3g48710	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.84340.1.A1_at	CK089707	-	-	4e-2	At3g55420	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	954	Triticum aestivum	Ta.14551.1.S1_at	CK172291	-	-	5e-1	At1g65710	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1608172_at	CD799315	-	-	1e-2	At2g18050	HIS1-3 (HISTONE H1-3)	C.G.	S.X.	Please select
0.36	1e-110	398	Zea mays	Zm.1317.1.A1_at	CF634693	signal recognition particle 19 kDa protein	-	6e+0	At2g40060	protein binding / structural molecule	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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