CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6370_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.3 Contig6370_at Contig6370 - - 9e-9 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative S.X. H.G.
0.43 56.4 Contig1955_s_at Contig1955 - - 5e-1 At5g17950 unknown protein S.X. H.G.
0.36 47.1 Contig13544_at Contig13544 - - 5e-2 At1g19300 PARVUS (PARVUS) S.X. H.G.
0.31 38.6 Contig14011_at Contig14011 - - 1e-1 At2g05400 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.25 28.9 rbaal15n16_s_at rbaal15n16 - - 6e+0 At4g14640 CAM8 (CALMODULIN 8) S.X. H.G.
0.13 11.6 Contig12811_at Contig12811 - - 3e-5 At5g01200 myb family transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.5 99.4 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
12.5 99.4 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
11.9 99.3 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
6.9 98.3 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
6.9 98.3 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
6.8 98.3 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
6.8 98.3 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
6.4 98.1 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 2e-159 561 Contig6028_s_at Contig6028 - - 3e-2 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.29 7e-48 190 Contig2590_at Contig2590 - - 4e-32 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.13 3e-10 65 Contig11109_at Contig11109 - - 1e-10 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.06 4e-6 52 HVSMEf0015C15f_at HVSMEf0015C15f - - 6e-10 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.02 1e-3 44 Contig10710_at Contig10710 - - 2e-13 At3g61530 PANB2 C.G. S.X.
0.01 2e-1 36 Contig8761_s_at Contig8761 - - 3e-1 At5g58010 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 2e-1 36 Contig8762_at Contig8762 - - 5e+0 At5g59410 - C.G. S.X.
0.01 2e-1 36 Contig8761_at Contig8761 - - 3e-1 At5g58010 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 1e+0 34 Contig14822_at Contig14822 - - 2e+0 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 9e-9 61 Arabidopsis thaliana At3g12390 820418 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative F:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVA - - - C.G. S.X.
0.11 3e-3 44 Glycine max GmaAffx.91307.1.S1_s_at CF807032 - - 8e-23 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.34 7e-48 192 Oryza sativa Os05g0373700 AB110178.1 - Alpha NAC/1.9.2. protein (Nascentpolypeptide-associated complex alpha polypeptide)(Alpha-NAC, non-muscle form) 6e-25 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.13 5e-8 59 Populus trichocarpa PtpAffx.83865.1.S1_at CK089015 - - 9e-21 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.70 0 827 Triticum aestivum Ta.6286.1.S1_at CD896026 - - 1e-4 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.20 4e-14 77 Vitis vinifera 1615712_s_at CB911214 similar to nascent polypeptide associated complex alpha - 2e-43 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.26 2e-23 109 Zea mays Zm.15829.1.A1_at AY103873.1 nascent polypeptide-associated complex alpha subunit-like protein - 5e-35 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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