Gene omics information

Query gene ID	Contig6358_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6358_at	Contig6358	-	-	6e-4	At1g06040	STO (SALT TOLERANCE)	S.X.	H.G.	Please select
0.67	84.7	Contig13524_at	Contig13524	-	-	2e-6	At5g49630	AAP6 (AMINO ACID PERMEASE 6)	S.X.	H.G.	Please select
0.33	42.6	Contig16346_at	Contig16346	-	-	5e-1	At3g45050	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	S.X.	H.G.	Please select
0.19	19.6	HI04H23u_at	HI04H23u	-	-	4e+0	At5g15290	integral membrane family protein	S.X.	H.G.	Please select
0.15	14.1	Contig12516_at	Contig12516	-	-	3e-9	At5g19490	DNA binding / sequence-specific DNA binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.3	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.7	99.2	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6	98.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.4	98.8	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.5	98.6	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.7	98.3	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	5e-49	194	Contig12706_at	Contig12706	-	-	7e+0	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig15347_at	Contig15347	-	-	3e-2	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	C.G.	S.X.	Please select
0.02	3e-1	36	HP01B12w_at	HP01B12w	-	-	5e+0	At5g42640	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig12366_at	Contig12366	-	-	9e-134	At5g05620	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig25039_at	Contig25039	-	-	5e+0	At5g49710	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18427_s_at	Contig18427	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	C.G.	S.X.	Please select
0.02	1e+0	34	rbaal6i04_s_at	rbaal6i04	-	-	3e-1	At2g31470	F-box family protein	C.G.	S.X.	Please select
0.02	1e+0	34	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	C.G.	S.X.	Please select
0.03	1e+0	34	HVSMEb0013L02r2_at	HVSMEb0013L02r2	-	-	4e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-4	46	Arabidopsis thaliana	At1g06040	837113	STO (SALT TOLERANCE)	Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-14	81	Glycine max	GmaAffx.82176.1.S1_at	CA802403	-	-	2e-5	At1g78600	LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.48	9e-97	355	Oryza sativa	Os02g0606200	AB001885.1	-	-	4e-2	At2g20613	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-1	36	Populus trichocarpa	Ptp.5152.1.A1_s_at	CV262007	-	-	5e+0	At5g27580	AGL89	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	777	Triticum aestivum	Ta.27094.1.S1_at	BT009289.1	-	-	2e-4	At1g06040	STO (SALT TOLERANCE)	C.G.	S.X.	Please select
0.03	3e-3	42	Vitis vinifera	1618741_at	CF208732	hypothetical protein LOC100257595	-	1e-10	At1g06040	STO (SALT TOLERANCE)	C.G.	S.X.	Please select
0.38	3e-102	371	Zea mays	Zm.17583.1.S1_at	AY109441.1	-	-	3e-3	At3g56120	Met-10+ like family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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