Gene omics information

Query gene ID	Contig6329_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	S.X.	H.G.	Please select
0.61	78.7	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	S.X.	H.G.	Please select
0.50	66.9	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	S.X.	H.G.	Please select
0.36	47.1	Contig4476_at	Contig4476	-	-	7e-26	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.28	35.5	HT07O19u_s_at	HT07O19u	-	-	2e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select
0.27	32.1	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	99.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
9.5	99.0	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
9.0	98.9	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
8.5	98.8	GSM160815	drought control rep3	GSE6990	Barley drought stress
7.8	98.6	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
7.8	98.6	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
6.5	98.2	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.5	98.2	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
6.5	98.2	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Contig5087_at	Contig5087	-	-	1e-2	At4g17520	nuclear RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	4e-1	36	HVSMEf0013H13r2_at	HVSMEf0013H13r2	-	-	1e+0	At5g65420	CYCD4	C.G.	S.X.	Please select
0.01	2e+0	34	Contig14026_at	Contig14026	-	-	3e-3	At1g01720	ATAF1	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7120_at	Contig7120	-	-	4e-18	At1g55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5830_s_at	Contig5830	-	-	7e+0	At2g25060	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig26597_at	Contig26597	-	-	9e-2	At5g47330	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig20919_at	Contig20919	-	-	5e+0	At3g62820	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8176_at	Contig8176	-	-	8e-32	At1g05350	thiF family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5831_at	Contig5831	-	-	2e+0	At3g51500	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-31	137	Arabidopsis thaliana	At2g40490	818644	HEME2	F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast, chloroplast stroma, chloroplast envelope;OBMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	2e-33	145	Glycine max	Gma.6694.1.S1_at	CA820228	-	-	2e-3	At2g40490	HEME2	C.G.	S.X.	Please select
0.71	0	1241	Oryza sativa	Os03g0337600	AK070859.1	-	Uroporphyrinogen decarboxylase (EC 4.1.1.37)(URO-D) (UPD) (Fragment)	3e-19	At2g40490	HEME2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-46	188	Populus trichocarpa	PtpAffx.15853.1.S1_at	CV237574	hypothetical protein	-	2e-41	At2g40490	HEME2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.90	0	1713	Triticum aestivum	Ta.28648.1.S1_s_at	CA630278	-	-	2e-13	At2g40490	HEME2	C.G.	S.X.	Please select
0.04	6e-2	38	Vitis vinifera	1621781_at	BQ793396	-	-	2e+0	At5g43260	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.64	0	1084	Zea mays	Zm.385.1.A1_at	AF058763.1	Lesion22	-	1e-21	At2g40490	HEME2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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