Gene omics information

Query gene ID	Contig6256_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.6	Contig6256_s_at	Contig6256	-	-	2e+1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	S.X.	H.G.	Please select
0.38	49.5	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	S.X.	H.G.	Please select
0.36	47.1	Contig7870_at	Contig7870	-	-	9e-6	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please select
0.36	47.1	Contig6445_at	Contig6445	-	-	1e-1	At2g20920	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig11015_at	Contig11015	-	-	1e-29	At4g14147	ARPC4	S.X.	H.G.	Please select
0.34	43.6	Contig10961_at	Contig10961	-	-	2e-1	At1g78260	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.32	40.3	Contig8908_at	Contig8908	-	-	3e-12	At2g21270	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.31	38.6	Contig8129_at	Contig8129	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	S.X.	H.G.	Please select
0.29	35.5	Contig6627_at	Contig6627	-	-	1e-6	At1g77710	-	S.X.	H.G.	Please select
0.26	30.4	Contig5746_at	Contig5746	-	-	3e+0	At5g64820	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.8	99.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.8	99.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.0	99.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.0	99.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
7.0	98.4	GSM398271	HS41-1_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7	98.3	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.2	98.0	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.0	97.9	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.0	97.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1184	Contig6256_at	Contig6256	-	-	2e+1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	C.G.	S.X.	Please select
0.64	0	668	HB02A02_T3_at	HB02A02_T3	-	-	2e+1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	C.G.	S.X.	Please select
0.66	5e-131	466	Contig21234_at	Contig21234	-	-	1e+0	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig25178_at	Contig25178	-	-	3e-1	At5g40382	cytochrome-c oxidase	C.G.	S.X.	Please select
0.02	6e-1	34	Contig9798_at	Contig9798	-	-	7e-1	At5g59150	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)	C.G.	S.X.	Please select
0.04	6e-1	34	Contig16640_at	Contig16640	-	-	3e-1	At5g21430	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig15820_at	Contig15820	-	-	4e-4	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11418_at	Contig11418	-	-	8e-3	At1g51270	structural molecule/ transmembrane receptor	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13799_at	Contig13799	-	-	2e-5	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+1	30	Arabidopsis thaliana	At5g01712	6241400	CPuORF48 (Conserved peptide upstream open reading frame 48)	Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF48 represents a conserved upstream opening reading frame relative to major ORF AT5G01710.1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psZG001xJ21f_at	PsAffx.psZG001xJ21f	-	-	1e+1	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	C.G.	S.X.	Please select
0.13	3e-15	83	Oryza sativa	Os05g0136200	AK059282.1	-	CBL-interacting protein kinase 1	2e-4	At1g48260	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.209992.1.S1_at	pmrna19712	hypothetical protein	-	3e+0	At5g05620	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	7e-101	367	Triticum aestivum	TaAffx.3524.1.S1_at	BE418657	-	-	2e-4	At1g48260	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	C.G.	S.X.	Please select
0.03	2e-2	38	Vitis vinifera	1620974_at	CA815987	hypothetical protein LOC100267239	-	4e-7	At5g51510	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.67.1.A1_at	AI665138	hypothetical protein LOC100277004	-	1e+1	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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