Gene omics information

Query gene ID Contig6251_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7991.4Contig6251_atContig6251--3e+0At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)S.X.H.G.
0.5975.8Contig16251_atContig16251--2e-2At1g74140-S.X.H.G.
0.5066.9HT05P07u_s_atHT05P07u--3e+0At1g32585VQ motif-containing protein-relatedS.X.H.G.
0.4661.0Contig20382_atContig20382--4e-1At1g53910RAP2.12S.X.H.G.
0.4559.3Contig26395_atContig26395--5e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)S.X.H.G.
0.4458.9Contig13261_atContig13261--4e-5At4g13730RabGAP/TBC domain-containing proteinS.X.H.G.
0.4356.4Contig8291_atContig8291--7e-4At5g58020unknown proteinS.X.H.G.
0.4356.4Contig11674_atContig11674--3e-1At5g49420MADS-box protein (AGL84)S.X.H.G.
0.4356.4Contig14264_atContig14264--2e+0At1g48780unknown proteinS.X.H.G.
0.4356.4Contig18744_atContig18744--2e+0At5g41630F-box family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
51.5100.0GSM71153Barke stress and unstress replicate 4GSE3170 Barley single feature polymorphisms and drought stress gene expression
50.699.9GSM71157Steptoe stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expression
36.699.9GSM71152Barke stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expression
35.299.9GSM71147OWB-D unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expression
33.599.9GSM71158Steptoe stress and unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expression
33.299.9GSM71146OWB-D unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expression
30.499.9GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
28.699.8GSM71145OWB-D unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expression
26.099.8GSM71159Steptoe stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expression
24.199.8GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.212e-1273Contig2532_atContig2532--5e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.149e-1167Contig2539_x_atContig2539--5e+0At4g24300peptidaseC.G.S.X.
0.149e-1167Contig2539_s_atContig2539--5e+0At4g24300peptidaseC.G.S.X.
0.149e-1167Contig2528_x_atContig2528--5e+0At1g15825hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.149e-857Contig5312_atContig5312--1e+1At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)C.G.S.X.
0.109e-548Contig5313_s_atContig5313--1e+0At4g1500060S ribosomal protein L27 (RPL27C)C.G.S.X.
0.143e-446Contig5311_atContig5311O-methyltransferase-7e-1At1g62900O-methyltransferase, putativeC.G.S.X.
0.051e-344HVSMEa0012K02r2_atHVSMEa0012K02r2--5e+0At3g01329-C.G.S.X.
0.102e-240Contig2535_s_atContig2535--3e-1At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Arabidopsis thalianaAt5g54160835504ATOMT1 (O-METHYLTRANSFERASE 1)A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase---C.G.S.X.
0.026e-240Glycine maxGma.4162.1.S1_atAI416757--3e-5At1g72430auxin-responsive protein-relatedC.G.S.X.
0.071e-1379Oryza sativaOs08g0157500AK064768.1-Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT)2e-7At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.204049.1.S1_atpmrna7985hypothetical protein-4e+0At2g04440NUDIX/mutT hydrolase family proteinC.G.S.X.
0.681e-138494Triticum aestivumTa.23042.1.S1_x_atBE517350--1e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.022e-446Vitis vinifera1617284_atCF511096hypothetical protein LOC100251744-2e-4At1g62900O-methyltransferase, putativeC.G.S.X.
0.138e-857Zea maysZm.1502.1.A1_atCF637870flavonoid O-methyltransferase-2e+0At3g09032unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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