CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig624_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 75.8 Contig624_at Contig624 - - 3e-3 At2g31390 pfkB-type carbohydrate kinase family protein S.X. H.G.
0.55 72.0 Contig20475_at Contig20475 - - 2e+0 At2g23067 unknown protein S.X. H.G.
0.46 61.0 Contig20343_at Contig20343 - - 3e-1 At2g20805 - S.X. H.G.
0.46 61.0 Contig7044_at Contig7044 - - 4e-3 At5g42090 - S.X. H.G.
0.40 53.1 Contig5311_at Contig5311 O-methyltransferase - 7e-1 At1g62900 O-methyltransferase, putative S.X. H.G.
0.36 47.1 Contig3680_s_at Contig3680 - - 3e-13 At4g24920 protein transport protein SEC61 gamma subunit, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.0 99.9 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
35.1 99.9 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.7 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.0 98.9 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3 98.8 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.2 98.7 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2 98.5 GSM146366 Maythorpe Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8 98.3 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7 98.3 GSM146363 Maythorpe Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6 98.2 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 6e-18 91 Contig101_at Contig101 - - 1e-2 At1g06030 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.14 2e-12 73 Contig109_at Contig109 - - 1e-5 At1g06030 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.01 8e-2 38 Contig12792_at Contig12792 - - 4e-12 At4g38730 unknown protein C.G. S.X.
0.01 3e-1 36 Contig11685_at Contig11685 - - 1e-1 At1g80390 IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15) C.G. S.X.
0.01 3e-1 36 Contig6137_at Contig6137 - - 3e-7 At2g34190 xanthine/uracil permease family protein C.G. S.X.
0.01 3e-1 36 Contig9444_at Contig9444 - - 5e-5 At5g53580 aldo/keto reductase family protein C.G. S.X.
0.02 1e+0 34 Contig708_at Contig708 - - 1e-15 At2g40205 60S ribosomal protein L41 (RPL41C) C.G. S.X.
0.01 1e+0 34 Contig2888_at Contig2888 NADP-dependent malic enzyme - 2e-17 At5g11670 ATNADP-ME2 (NADP-malic enzyme 2) C.G. S.X.
0.02 1e+0 34 Contig21563_at Contig21563 - - 6e+0 At5g28390 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-3 44 Arabidopsis thaliana At2g31390 817697 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:plasma membrane;BOPAMF - - - C.G. S.X.
0.15 5e-21 103 Glycine max GmaAffx.89990.1.S1_s_at CF805715 - - 6e-30 At3g59480 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.62 0 1191 Oryza sativa Os08g0113100 AF429947.1 - Fructokinase 2 8e-13 At4g10260 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.08 1e-2 42 Populus trichocarpa PtpAffx.215585.1.S1_at pmrna29863 hypothetical protein - 6e-53 At4g10260 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.80 0 1655 Triticum aestivum Ta.9577.1.S1_at BJ250553 - - 2e-1 At3g59480 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.11 2e-11 69 Vitis vinifera 1622282_at CD712313 hypothetical protein LOC100245852 - 2e-10 At1g06020 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.56 0 967 Zea mays Zm.711.1.S1_at AY197773.1 Fructokinase 2 - 3e-3 At4g10260 pfkB-type carbohydrate kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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