Gene omics information

Query gene ID	Contig6238_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.83	94.0	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	S.X.	H.G.	Please select
0.60	77.3	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.55	72.0	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	S.X.	H.G.	Please select
0.27	32.1	Contig6433_at	Contig6433	-	-	5e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.5	99.9	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
24.0	99.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
23.9	99.8	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.4	99.8	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
22.4	99.8	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
21.5	99.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
21.2	99.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
20.3	99.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
18.9	99.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
18.6	99.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	9e-16	83	Contig13240_s_at	Contig13240	-	-	4e-1	At3g24750	unknown protein	C.G.	S.X.	Please select
0.21	4e-12	71	Contig1597_s_at	Contig1597	-	-	2e+0	At2g16575	unknown protein	C.G.	S.X.	Please select
0.06	1e-8	59	Contig21026_at	Contig21026	-	-	2e+0	At2g30870	GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10)	C.G.	S.X.	Please select
0.07	5e-8	57	Contig2976_at	Contig2976	-	-	3e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select
0.07	5e-8	57	Contig2975_s_at	Contig2975	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select
0.07	3e-6	52	Contig2425_s_at	Contig2425	-	-	2e+0	At5g06900	CYP93D1	C.G.	S.X.	Please select
0.07	3e-6	52	Contig2425_at	Contig2425	-	-	2e+0	At5g06900	CYP93D1	C.G.	S.X.	Please select
0.05	5e-5	48	HVSMEa0001A19r2_x_at	HVSMEa0001A19r2	-	-	1e+1	At4g24340	phosphorylase family protein	C.G.	S.X.	Please select
0.05	5e-5	48	HVSMEa0001A19r2_at	HVSMEa0001A19r2	-	-	1e+1	At4g24340	phosphorylase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-7	57	Arabidopsis thaliana	At2g30860	817636	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	PsAffx.CL283Contig1_at	PsAffx.CL283Contig1	-	-	6e-2	At4g10970	unknown protein	C.G.	S.X.	Please select
0.55	2e-44	180	Oryza sativa	Os01g0369700	AF309382.1	-	Glutathione S-transferase GST 8 (EC 2.5.1.18)	2e+0	At5g53250	AGP22 (ARABINOGALACTAN PROTEIN 22)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e-1	36	Populus trichocarpa	PtpAffx.211928.1.S1_at	pmrna23424	hypothetical protein	-	2e+0	At2g33793	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	831	Triticum aestivum	Ta.5629.1.S1_x_at	BT009443.1	-	-	2e-3	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1616495_at	CF517304	glutathione S-transferase 5	-	1e-1	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select
0.42	7e-35	147	Zea mays	Zm.539.1.A1_at	AF244673.1	Glutathione S-transferase 8	-	1e-1	At5g52550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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