Gene omics information

Query gene ID	Contig6235_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.80	92.5	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.77	90.8	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	S.X.	H.G.	Please select
0.73	88.7	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	S.X.	H.G.	Please select
0.31	38.6	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.2	99.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.7	99.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.9	99.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.2	99.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
15.2	99.5	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.4	99.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.8	99.4	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.9	99.3	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1	99.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	3e-101	367	Contig6233_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	C.G.	S.X.	Please select
0.36	3e-101	367	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	C.G.	S.X.	Please select
0.07	7e-16	83	Contig15241_at	Contig15241	-	-	6e+0	At3g44280	unknown protein	C.G.	S.X.	Please select
0.02	2e-4	46	Contig6485_at	Contig6485	-	-	3e-1	At5g24630	BIN4 (brassinosteroid-insensitive4)	C.G.	S.X.	Please select
0.04	4e-2	38	HVSMEa0005I19r2_at	HVSMEa0005I19r2	-	-	4e+0	At5g64541	unknown protein	C.G.	S.X.	Please select
0.04	4e-2	38	Contig25516_at	Contig25516	-	-	8e-1	At2g39000	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig8006_at	Contig8006	-	-	6e-1	At4g13100	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	4e-2	38	Contig7226_at	Contig7226	-	-	2e-21	At3g54540	ATGCN4	C.G.	S.X.	Please select
0.02	2e-1	36	Contig14284_at	Contig14284	-	-	4e-1	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g27850	822405	RPL12-C (ribosomal protein l12-c)	50S ribosomal protein L12-C	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	PsAffx.psZS010xK06f_s_at	PsAffx.psZS010xK06f	-	-	3e-1	At1g19300	PARVUS (PARVUS)	C.G.	S.X.	Please select
0.07	8e-16	85	Oryza sativa	Os01g0884300	AK068392.1	-	No apical meristem (NAM) protein domain containingprotein	7e-29	At1g01720	ATAF1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.214571.1.S1_at	pmrna28306	hypothetical protein	-	3e-9	At4g32295	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.81306.1.S1_at	CA687646	-	-	8e+0	At3g56030	-	C.G.	S.X.	Please select
0.04	1e-4	46	Vitis vinifera	1612905_s_at	CB345326	hypothetical protein LOC100258381	-	5e-3	At1g12830	unknown protein	C.G.	S.X.	Please select
0.08	3e-18	91	Zea mays	Zm.4838.1.A1_at	AI649483	-	-	1e-5	At1g01720	ATAF1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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