Gene omics information

Query gene ID Contig6233_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig6233_s_atContig6233--3e-8At5g08790ATAF2S.X.H.G.
0.7790.8Contig6238_s_atContig6238--1e-7At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)S.X.H.G.
0.6077.3Contig6235_s_atContig6235--1e+0At3g27850RPL12-C (ribosomal protein l12-c)S.X.H.G.
0.5572.0Contig15767_atContig15767--1e-1At1g21520unknown proteinS.X.H.G.
0.4053.1Contig6433_atContig6433--5e-1At5g66460(1-4)-beta-mannan endohydrolase, putativeS.X.H.G.
0.4053.1Contig6431_atContig6431--3e-1At2g18110elongation factor 1-beta, putative / EF-1-beta, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
18.799.7GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.499.6GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.799.5GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.699.4GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.699.4GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.599.4GSM261060Xantha b-12 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.499.3GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.199.2GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.799.2GSM261059Xantha b-12 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.299.1GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9701235Contig6233_atContig6233--3e-8At5g08790ATAF2C.G.S.X.
0.365e-101367Contig6235_s_atContig6235--1e+0At3g27850RPL12-C (ribosomal protein l12-c)C.G.S.X.
0.278e-35147Contig13658_atContig13658--2e-1At1g69490NAP (NAC-like, activated by AP3/PI)C.G.S.X.
0.271e-24113Contig3362_atContig3362--3e-3At5g08790ATAF2C.G.S.X.
0.174e-24111Contig3361_atContig3361--8e-4At1g01720ATAF1C.G.S.X.
0.164e-1891Contig9757_atContig9757--9e-16At3g04060anac046 (Arabidopsis NAC domain containing protein 46)C.G.S.X.
0.213e-1685Contig14026_atContig14026--3e-3At1g01720ATAF1C.G.S.X.
0.064e-1271Contig15867_atContig15867--7e-3At3g18400anac058 (Arabidopsis NAC domain containing protein 58)C.G.S.X.
0.144e-1271rbah54n13_s_atrbah54n13--8e-5At1g76420CUC3 (CUP SHAPED COTYLEDON3)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.143e-859Arabidopsis thalianaAt5g08790830779ATAF2induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.---C.G.S.X.
0.241e-1171Glycine maxGmaAffx.92625.1.S1_s_atCF807343NAC domain protein-8e-42At1g01720ATAF1C.G.S.X.
0.393e-62240Oryza sativaOs11g0184900AB028184.1-OsNAC5 protein6e-2At5g08790ATAF2C.G.S.X.
0.126e-446Populus trichocarpaPtpAffx.13344.2.S1_a_atCV254122NAC domain protein, IPR003441-7e-19At1g01720ATAF1C.G.S.X.
0.393e-36153Triticum aestivumTaAffx.28261.1.S1_atCA662580--1e+0At5g63790ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)C.G.S.X.
0.301e-23109Vitis vinifera1609555_atCD719835hypothetical protein LOC100261123-2e-30At5g08790ATAF2C.G.S.X.
0.241e-1789Zea maysZm.5882.1.A1_atAI637237--2e-1At1g52880NAM (NO APICAL MERISTEM)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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