CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig6233_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 S.X. H.G.
0.77 90.8 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) S.X. H.G.
0.60 77.3 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) S.X. H.G.
0.55 72.0 Contig15767_at Contig15767 - - 1e-1 At1g21520 unknown protein S.X. H.G.
0.40 53.1 Contig6433_at Contig6433 - - 5e-1 At5g66460 (1-4)-beta-mannan endohydrolase, putative S.X. H.G.
0.40 53.1 Contig6431_at Contig6431 - - 3e-1 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.7 99.7 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.4 99.6 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.7 99.5 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.6 99.4 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.6 99.4 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.5 99.4 GSM261060 Xantha b-12 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.4 99.3 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1 99.2 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.7 99.2 GSM261059 Xantha b-12 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2 99.1 GSM261065 Xantha s-46 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1235 Contig6233_at Contig6233 - - 3e-8 At5g08790 ATAF2 C.G. S.X.
0.36 5e-101 367 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) C.G. S.X.
0.27 8e-35 147 Contig13658_at Contig13658 - - 2e-1 At1g69490 NAP (NAC-like, activated by AP3/PI) C.G. S.X.
0.27 1e-24 113 Contig3362_at Contig3362 - - 3e-3 At5g08790 ATAF2 C.G. S.X.
0.17 4e-24 111 Contig3361_at Contig3361 - - 8e-4 At1g01720 ATAF1 C.G. S.X.
0.16 4e-18 91 Contig9757_at Contig9757 - - 9e-16 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.21 3e-16 85 Contig14026_at Contig14026 - - 3e-3 At1g01720 ATAF1 C.G. S.X.
0.06 4e-12 71 Contig15867_at Contig15867 - - 7e-3 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) C.G. S.X.
0.14 4e-12 71 rbah54n13_s_at rbah54n13 - - 8e-5 At1g76420 CUC3 (CUP SHAPED COTYLEDON3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 3e-8 59 Arabidopsis thaliana At5g08790 830779 ATAF2 induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain. - - - C.G. S.X.
0.24 1e-11 71 Glycine max GmaAffx.92625.1.S1_s_at CF807343 NAC domain protein - 8e-42 At1g01720 ATAF1 C.G. S.X.
0.39 3e-62 240 Oryza sativa Os11g0184900 AB028184.1 - OsNAC5 protein 6e-2 At5g08790 ATAF2 C.G. S.X.
0.12 6e-4 46 Populus trichocarpa PtpAffx.13344.2.S1_a_at CV254122 NAC domain protein, IPR003441 - 7e-19 At1g01720 ATAF1 C.G. S.X.
0.39 3e-36 153 Triticum aestivum TaAffx.28261.1.S1_at CA662580 - - 1e+0 At5g63790 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) C.G. S.X.
0.30 1e-23 109 Vitis vinifera 1609555_at CD719835 hypothetical protein LOC100261123 - 2e-30 At5g08790 ATAF2 C.G. S.X.
0.24 1e-17 89 Zea mays Zm.5882.1.A1_at AI637237 - - 2e-1 At1g52880 NAM (NO APICAL MERISTEM) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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