Gene omics information

Query gene ID	Contig6213_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6213_x_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.77	90.8	Contig6214_at	Contig6214	-	-	2e-1	At3g50930	BCS1 (CYTOCHROME BC1 SYNTHESIS)	S.X.	H.G.	Please select
0.61	78.7	Contig6213_s_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.50	66.9	Contig777_at	Contig777	-	-	1e+0	At2g42000	plant EC metallothionein-like family 15 protein	S.X.	H.G.	Please select
0.23	26.1	Contig15163_at	Contig15163	-	-	1e+0	At3g59840	unknown protein	S.X.	H.G.	Please select
0.21	22.6	Contig17657_at	Contig17657	-	-	3e+0	At5g25750	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	98.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.5	98.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
5.4	97.5	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.3	97.4	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.2	97.4	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
5.0	97.2	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
4.8	97.0	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
4.7	96.9	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	2321	Contig6213_s_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.90	0	2321	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.38	2e-178	624	HVSMEa0012A19r2_x_at	HVSMEa0012A19r2	-	-	1e+1	At2g07505	unknown protein	C.G.	S.X.	Please select
0.38	2e-178	624	HVSMEa0012A19r2_at	HVSMEa0012A19r2	-	-	1e+1	At2g07505	unknown protein	C.G.	S.X.	Please select
0.19	6e-46	184	Contig7454_at	Contig7454	-	-	1e-8	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.02	6e-3	42	Contig2518_s_at	Contig2518	-	-	6e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig12788_at	Contig12788	-	-	1e-5	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	9e-2	38	Contig16814_at	Contig16814	-	-	6e-5	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.02	9e-2	38	Contig2470_s_at	Contig2470	-	-	1e-1	At4g16380	metal ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-4	46	Arabidopsis thaliana	At1g05850	837095	POM1 (POM-POM1)	Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-5	52	Glycine max	Gma.10757.2.S1_s_at	BG650239	-	-	2e-4	At3g16920	chitinase	C.G.	S.X.	Please select
0.50	0	906	Oryza sativa	Os09g0494200	AK069564.1	-	Glycoside hydrolase, family 19 protein	4e-6	At3g16920	chitinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.215631.1.S1_s_at	pmrna29923	hypothetical protein	-	6e-7	At2g39445	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	1818	Triticum aestivum	Ta.4385.1.S1_at	BQ237751	-	-	1e-2	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.12	2e-5	50	Vitis vinifera	1614551_at	CB343715	hypothetical protein LOC100261982	-	2e-18	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.49	0	868	Zea mays	Zm.3726.1.A1_at	AY105990.1	hypothetical protein LOC100274504	-	2e-1	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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