Gene omics information

Query gene ID	Contig6132_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig6132_at	Contig6132	-	-	9e-8	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	S.X.	H.G.	Please select
0.71	87.1	Contig2841_at	Contig2841	-	-	2e-3	At1g29850	double-stranded DNA-binding family protein	S.X.	H.G.	Please select
0.68	85.1	Contig5995_at	Contig5995	-	-	2e+0	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	S.X.	H.G.	Please select
0.61	78.7	Contig6012_at	Contig6012	-	-	6e-16	At3g62580	-	S.X.	H.G.	Please select
0.58	74.9	Contig5874_s_at	Contig5874	-	-	1e+0	At1g48610	AT hook motif-containing protein	S.X.	H.G.	Please select
0.52	68.3	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.52	68.3	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.51	67.5	Contig2837_at	Contig2837	-	-	1e-12	At3g23800	SBP3 (selenium-binding protein 3)	S.X.	H.G.	Please select
0.51	67.5	Contig4880_at	Contig4880	-	-	2e-20	At1g61800	GPT2	S.X.	H.G.	Please select
0.50	66.9	Contig18108_at	Contig18108	-	-	2e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.1	96.2	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.0	93.8	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-140	500	HVSMEa0004I10f2_s_at	HVSMEa0004I10f2	-	-	2e-4	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.23	2e-28	127	Contig3479_at	Contig3479	-	-	4e-15	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.04	5e-14	79	HY05O16u_s_at	HY05O16u	-	-	2e-4	At3g51490	TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3)	C.G.	S.X.	Please select
0.04	5e-14	79	HY05O16u_at	HY05O16u	-	-	2e-4	At3g51490	TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3)	C.G.	S.X.	Please select
0.01	7e-4	46	Contig7919_at	Contig7919	-	-	6e-23	At4g01690	PPOX	C.G.	S.X.	Please select
0.01	7e-1	36	Contig18016_at	Contig18016	-	-	2e+0	At4g19350	EMB3006 (embryo defective 3006)	C.G.	S.X.	Please select
0.01	3e+0	34	Contig8683_at	Contig8683	-	-	5e-1	At1g58070	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	Contig19422_at	Contig19422	-	-	5e+0	At3g14360	lipase class 3 family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Contig4208_at	Contig4208	-	-	6e-6	At2g36580	pyruvate kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	9e-8	59	Arabidopsis thaliana	At4g35300	829684	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-9	65	Glycine max	Gma.8384.1.A1_at	BG881817	-	-	5e-4	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.66	0	1154	Oryza sativa	Os02g0229400	AK120560.1	-	-	7e-12	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	3e-11	71	Populus trichocarpa	Ptp.6521.1.S1_at	CV270263	hypothetical protein	-	2e-7	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	2740	Triticum aestivum	Ta.946.1.S1_at	BT009593.1	-	-	2e-5	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.04	3e-2	40	Vitis vinifera	1615257_at	CB972713	hexose transporter-like	-	6e-12	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.52	7e-124	444	Zea mays	Zm.12169.1.S1_at	CK370768	-	-	1e+0	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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