Gene omics information

Query gene ID	Contig6079_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	95.0	Contig6079_s_at	Contig6079	-	-	4e-2	At3g23620	brix domain-containing protein	S.X.	H.G.	Please select
0.32	40.3	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.28	35.5	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.27	32.1	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select
0.26	30.4	Contig13185_at	Contig13185	-	-	5e-3	At3g18520	HDA15	S.X.	H.G.	Please select
0.25	28.9	Contig13516_at	Contig13516	-	-	2e+0	At1g35210	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig6066_at	Contig6066	-	-	4e+0	At5g23640	unknown protein	S.X.	H.G.	Please select
0.24	27.2	Contig5074_at	Contig5074	-	-	4e-1	At3g54560	HTA11	S.X.	H.G.	Please select
0.24	27.2	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.23	26.1	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
8.3	98.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.8	98.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3	98.1	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-12	71	rbaal12b04_at	rbaal12b04	-	-	5e+0	At5g46990	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig9273_at	Contig9273	-	-	8e-1	At2g37470	histone H2B, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3579_x_at	Contig3579	-	-	4e-1	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17553_at	Contig17553	-	-	2e-34	At1g08040	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3579_at	Contig3579	-	-	4e-1	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig16387_at	Contig16387	-	-	2e-6	At1g74700	TRZ1 (TRNASE Z 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig15438_at	Contig15438	-	-	3e-1	At5g19875	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig14662_at	Contig14662	-	-	3e-1	At4g03180	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-2	40	Arabidopsis thaliana	At3g23620	821942	brix domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	GmaAffx.85897.1.S1_at	BF068942	-	-	9e-1	At5g06240	emb2735 (embryo defective 2735)	C.G.	S.X.	Please select
0.56	0	787	Oryza sativa	Os01g0513800	AK100776.1	-	Brix domain containing protein 1 homolog	1e-2	At3g23620	brix domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.211753.1.S1_at	pmrna23029	-	-	1e+1	At5g58400	peroxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1572	Triticum aestivum	Ta.7097.1.S1_x_at	CK154419	-	-	8e-1	At3g23620	brix domain-containing protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1612980_at	CD718165	-	-	4e+0	At4g12090	cornichon family protein	C.G.	S.X.	Please select
0.53	2e-162	571	Zea mays	Zm.1829.1.A1_at	CF637700	brix domain-containing protein 1	-	3e+0	At5g17710	EMB1241 (embryo defective 1241)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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