Gene omics information

Query gene ID	Contig6023_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig6023_s_at	Contig6023	-	-	3e-12	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig15978_at	Contig15978	-	-	4e-1	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	S.X.	H.G.	Please select
0.40	53.1	Contig10218_at	Contig10218	-	-	2e+0	At2g44820	unknown protein	S.X.	H.G.	Please select
0.40	53.1	HX04E17u_s_at	HX04E17u	-	-	1e+0	At5g12340	unknown protein	S.X.	H.G.	Please select
0.27	32.1	Contig10012_at	Contig10012	-	-	6e-8	At5g24630	BIN4 (brassinosteroid-insensitive4)	S.X.	H.G.	Please select
0.25	28.9	Contig12918_at	Contig12918	-	-	3e+1	At5g02280	synbindin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.2	96.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	1859	Contig6022_at	Contig6022	-	-	8e-13	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.20	5e-40	165	HW09K16u_at	HW09K16u	-	-	9e-2	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig14798_at	Contig14798	-	-	2e-1	At2g36290	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig8768_at	Contig8768	-	-	2e-6	At3g09770	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig13724_at	Contig13724	-	-	1e-7	At5g09770	ribosomal protein L17 family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4825_at	Contig4825	-	-	9e-16	At5g61670	-	C.G.	S.X.	Please select
0.02	4e+0	32	Contig16892_at	Contig16892	-	-	3e-1	At5g40790	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig16693_at	Contig16693	-	-	1e+0	At5g57920	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	Contig16086_at	Contig16086	-	-	6e-3	At4g39720	VQ motif-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-12	73	Arabidopsis thaliana	At4g12230	826831	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-23	111	Glycine max	GmaAffx.42816.1.S1_at	CA783094	-	-	4e-21	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.48	0	698	Oryza sativa	Os10g0169800	AK067281.1	-	Alpha/beta hydrolase fold domain containingprotein	7e-32	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-14	81	Populus trichocarpa	PtpAffx.132474.1.S1_at	BP927927	hypothetical protein	-	2e-101	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-1	36	Triticum aestivum	TaAffx.77719.1.S1_at	CA743701	-	-	1e+0	At1g03680	ATHM1	C.G.	S.X.	Please select
0.14	2e-22	105	Vitis vinifera	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.12	2e-32	139	Zea mays	Zm.19164.1.A1_at	CO522564	maspardin	-	4e-1	At5g66360	ribosomal RNA adenine dimethylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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