Gene omics information

Query gene ID	Contig6006_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig6006_s_at	Contig6006	-	-	3e+0	At1g60830	U2 snRNP auxiliary factor large subunit, putative	S.X.	H.G.	Please select
0.91	98.1	Contig6005_x_at	Contig6005	-	-	3e-1	At1g20130	hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall	S.X.	H.G.	Please select
0.67	84.7	Contig2041_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	S.X.	H.G.	Please select
0.67	84.7	Contig2041_x_at	Contig2041	-	-	1e+0	At3g61310	DNA-binding family protein	S.X.	H.G.	Please select
0.50	66.9	Contig8898_at	Contig8898	-	-	2e-29	At2g25570	binding	S.X.	H.G.	Please select
0.44	58.9	Contig4406_x_at	Contig4406	-	-	2e+0	At4g25110	AtMC2 (metacaspase 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
76.7	100.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
65.3	100.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
30.7	99.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.2	99.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.9	99.7	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
15.2	99.5	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
14.8	99.5	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.4	99.4	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.7	98.9	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.1	98.4	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	0	722	Contig6005_x_at	Contig6005	-	-	3e-1	At1g20130	hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall	C.G.	S.X.	Please select
0.63	4e-106	383	Contig6004_x_at	Contig6004	-	-	1e+0	At4g01640	-	C.G.	S.X.	Please select
0.63	4e-106	383	Contig6004_at	Contig6004	-	-	1e+0	At4g01640	-	C.G.	S.X.	Please select
0.30	1e-31	135	HZ49N13r_at	HZ49N13r	-	-	3e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	C.G.	S.X.	Please select
0.02	3e-2	38	Contig9679_at	Contig9679	-	-	2e-1	At5g48370	thioesterase family protein	C.G.	S.X.	Please select
0.05	1e-1	36	EBro03_SQ005_N20_at	EBro03_SQ005_N20	-	-	3e+0	At3g29370	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	34	Contig4778_at	Contig4778	-	-	6e-8	At3g53710	AGD6	C.G.	S.X.	Please select
0.02	4e-1	34	Contig10300_at	Contig10300	-	-	4e-2	At4g21740	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig6275_at	Contig6275	-	-	4e-10	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At1g60830	842376	U2 snRNP auxiliary factor large subunit, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.16678.1.S1_at	CB279678	-	-	9e-1	At5g45880	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.11	7e-6	52	Oryza sativa	Os03g0314500	AK065474.1	-	Quinonprotein alcohol dehydrogenase-like domaincontaining protein	1e+0	At1g13860	dehydration-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.217079.1.S1_at	pmrna32216	hypothetical protein	-	3e+0	At5g09710	magnesium transporter CorA-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-26	119	Triticum aestivum	TaAffx.109962.1.S1_at	AJ611533	-	-	5e+0	At5g26940	exonuclease family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1618759_at	CB348270	hypothetical protein LOC100256813	-	1e+0	At1g76010	nucleic acid binding	C.G.	S.X.	Please select
0.04	3e-1	34	Zea mays	Zm.5169.1.A1_at	AY104222.1	Fructokinase 1	-	7e-4	At1g06020	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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