CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5994_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig5994_s_at Contig5994 - - 3e+0 At5g56060 ATP binding / nucleotide binding / phenylalanine-tRNA ligase S.X. H.G.
0.40 53.1 EBpi03_SQ003_J22_at EBpi03_SQ003_J22 - - 2e+0 At4g05100 AtMYB74 (myb domain protein 74) S.X. H.G.
0.20 21.1 Contig19802_at Contig19802 - - 3e+0 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) S.X. H.G.
0.13 11.6 Contig5927_at Contig5927 - - 1e-1 At1g22480 plastocyanin-like domain-containing protein S.X. H.G.
0.12 10.4 Contig3302_at Contig3302 - - 3e-1 At2g01100 unknown protein S.X. H.G.
0.04 3.4 Contig2616_at Contig2616 - - 2e+0 At5g11990 proline-rich family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.3 99.9 GSM130803 JA, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
19.4 99.7 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
17.4 99.6 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
16.8 99.6 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.3 99.6 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.2 99.6 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
15.7 99.6 GSM281748 Genotype: Morex - rep1 GSE11182 Steptoe x Morex seedling leaf comparison
15.6 99.6 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.5 99.6 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
13.9 99.5 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 2593 Contig5994_at Contig5994 - - 3e+0 At5g56060 ATP binding / nucleotide binding / phenylalanine-tRNA ligase C.G. S.X.
0.07 1e-6 54 Contig6992_at Contig6992 - - 1e+0 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.01 8e-2 38 AB024007_at AB024007 - - 6e-1 At1g33800 unknown protein C.G. S.X.
0.01 8e-2 38 Contig10331_at Contig10331 - - 1e-9 At2g25800 - C.G. S.X.
0.01 3e-1 36 Contig8214_at Contig8214 - - 2e-1 At2g40150 - C.G. S.X.
0.02 3e-1 36 Contig13422_at Contig13422 - - 5e+0 At5g47200 ATRAB1A C.G. S.X.
0.02 3e-1 36 EBro07_SQ002_H02_at EBro07_SQ002_H02 - - 2e+0 At5g45970 ARAC2 (ARABIDOPSIS RAC-LIKE 2) C.G. S.X.
0.01 3e-1 36 Contig14103_at Contig14103 - - 2e-1 At4g19040 EDR2 C.G. S.X.
0.01 1e+0 34 Contig7901_at Contig7901 - - 6e-10 At5g13640 ATPDAT C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At5g56060 835704 ATP binding / nucleotide binding / phenylalanine-tRNA ligase F:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOB - - - C.G. S.X.
0.03 4e-3 44 Glycine max GmaAffx.92976.1.S1_s_at CF808701 arginine decarboxylase - 3e-11 At2g16500 ADC1 (ARGININE DECARBOXYLASE 1) C.G. S.X.
0.32 7e-67 256 Oryza sativa Os04g0107600 AK058573.1 - Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC) 1e+0 At5g08139 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e-2 40 Populus trichocarpa PtpAffx.126845.1.A1_at CV283705 - - 4e+0 At5g20720 CPN20 (CHAPERONIN 20) C.G. S.X.
0.29 2e-53 210 Triticum aestivum Ta.26034.1.A1_at CD454830 - - 5e+0 At1g64405 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1607166_at CF517014 hypothetical protein LOC100254901 - 2e+1 Atmg00730 - C.G. S.X.
0.26 2e-45 182 Zea mays Zm.15155.1.A1_at CO526660 hypothetical protein LOC100193626 - 2e+0 At3g27200 plastocyanin-like domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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