Gene omics information

Query gene ID	Contig5985_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	85.5	Contig5985_at	Contig5985	-	-	1e-3	At3g50590	nucleotide binding	S.X.	H.G.	Please select
0.60	77.3	HW09F23V_s_at	HW09F23V	-	-	3e+0	At4g10240	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.53	69.7	Contig23513_at	Contig23513	-	-	7e+0	At5g49260	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig6263_at	Contig6263	-	-	2e+0	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	S.X.	H.G.	Please select
0.38	49.5	Contig3699_s_at	Contig3699	-	-	1e+0	At2g26060	emb1345 (embryo defective 1345)	S.X.	H.G.	Please select
0.34	43.6	Contig11819_s_at	Contig11819	-	-	3e-3	At1g08320	bZIP family transcription factor	S.X.	H.G.	Please select
0.33	42.6	Contig10705_at	Contig10705	-	-	9e-13	At3g56850	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.26	30.4	Contig5586_at	Contig5586	-	-	2e-8	At1g48350	ribosomal protein L18 family protein	S.X.	H.G.	Please select
0.24	27.2	Contig4366_at	Contig4366	-	-	5e-16	At5g49810	MMT	S.X.	H.G.	Please select
0.22	24.2	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
10.6	99.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
10.6	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.6	97.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.5	97.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.2	97.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.2	97.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-119	428	HA11D16u_s_at	HA11D16u	-	-	2e+0	At1g08520	CHLD	C.G.	S.X.	Please select
0.01	1e-1	38	HA09n12r_at	HA09n12r	-	-	2e-1	At3g43850	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig11686_at	Contig11686	-	-	3e+0	At5g67640	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig10278_at	Contig10278	-	-	3e+0	At1g12080	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig4470_s_at	Contig4470	-	-	3e-1	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please select
0.01	5e-1	36	Contig16046_at	Contig16046	-	-	1e+0	At5g10860	CBS domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6768_at	Contig6768	-	-	4e-4	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	C.G.	S.X.	Please select
0.02	2e+0	34	rbags17d18_s_at	rbags17d18	-	-	2e+1	At5g41660	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6918_s_at	Contig6918	-	-	2e+0	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-3	46	Arabidopsis thaliana	At3g50590	824223	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-2	42	Glycine max	Gma.11249.1.S1_at	AW348404	-	-	3e-47	At3g50590	nucleotide binding	C.G.	S.X.	Please select
0.46	2e-145	517	Oryza sativa	Os09g0408000	AK059658.1	-	Conserved hypothetical protein	2e-11	At3g50590	nucleotide binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-6	56	Populus trichocarpa	Ptp.6322.2.A1_a_at	CV241840	-	-	4e-1	At1g61810	BGLU45 (BETA-GLUCOSIDASE 45)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	3043	Triticum aestivum	Ta.6698.1.S1_at	CK200349	-	-	2e-9	At3g50590	nucleotide binding	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1619607_s_at	CF202338.1	hypothetical protein LOC100242775	-	7e-3	At4g11020	unknown protein	C.G.	S.X.	Please select
0.53	0	787	Zea mays	Zm.5951.1.A1_at	AI665912	-	-	3e-14	At3g50590	nucleotide binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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