CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5969_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig5969_at Contig5969 - - 7e-4 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) S.X. H.G.
0.80 92.5 Contig10453_at Contig10453 - - 9e-1 At5g19485 transferase S.X. H.G.
0.67 84.7 Contig4324_at Contig4324 - - 8e+0 At4g26060 unknown protein S.X. H.G.
0.67 84.7 Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein S.X. H.G.
0.61 78.7 Contig5966_at Contig5966 - - 9e-2 At4g33360 terpene cyclase/mutase-related S.X. H.G.
0.50 66.9 Contig5763_s_at Contig5763 C-8,7-sterol isomerase - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.7 98.6 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1 98.4 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
6.9 98.3 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9 97.9 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM440974 Stressed awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.0 97.2 GSM372969 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0 97.2 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9 97.1 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9 97.1 GSM261055 Bonus Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7 96.9 GSM372972 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-2 38 Contig6674_at Contig6674 - - 7e-20 At4g30810 scpl29 (serine carboxypeptidase-like 29) C.G. S.X.
0.01 8e-2 38 Contig3977_at Contig3977 - - 2e-11 At1g77130 PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) C.G. S.X.
0.03 3e-1 36 Contig11552_at Contig11552 - - 1e-13 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.01 3e-1 36 Contig4006_at Contig4006 - - 3e-59 At3g18000 XPL1 (XIPOTL 1) C.G. S.X.
0.01 3e-1 36 Contig2493_s_at Contig2493 - - 6e-1 At5g20900 JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) C.G. S.X.
0.01 1e+0 34 Contig10368_at Contig10368 - - 4e-1 At1g36940 unknown protein C.G. S.X.
0.01 1e+0 34 Contig19394_at Contig19394 - - 1e-2 At4g36270 ATP binding C.G. S.X.
0.02 1e+0 34 HZ45O16r_at HZ45O16r - - 1e+1 Atmg00120 - C.G. S.X.
0.02 1e+0 34 Contig7662_at Contig7662 - - 5e+0 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-4 46 Arabidopsis thaliana At1g64970 842805 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves - - - C.G. S.X.
0.15 1e-6 56 Glycine max Gma.11154.4.S1_at BQ786176 gamma-tocopherol methyltransferase - 1e-11 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
0.53 0 724 Oryza sativa Os02g0701600 AK071763.1 - Tocopherol O-methyltransferase, chloroplastprecursor (EC 2.1.1.95) (Gamma-tocopherolmethyltransferase) 3e-6 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
0.17 1e-15 85 Populus trichocarpa PtpAffx.28982.1.S1_at CV265484 hypothetical protein - 6e-11 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
0.73 0 1659 Triticum aestivum Ta.21089.1.S1_at CK216039 gamma tocopherol methyltransferase - 8e-4 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
0.17 4e-21 101 Vitis vinifera 1613635_at CF515464 hypothetical protein LOC100242641 - 2e-1 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
0.48 2e-63 242 Zea mays Zm.5799.1.A1_at AI649714 gamma-tocopherol methyltransferase - 8e-13 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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