Gene omics information

Query gene ID	Contig5966_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	S.X.	H.G.	Please select
0.67	84.7	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	S.X.	H.G.	Please select
0.67	84.7	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	S.X.	H.G.	Please select
0.50	66.9	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	S.X.	H.G.	Please select
0.40	53.1	EBpi01_SQ002_O15_at	EBpi01_SQ002_O15	-	-	2e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	S.X.	H.G.	Please select
0.38	49.5	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.5	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.9	97.1	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-81	301	S0001100160A01F1_at	S0001100160A01F1	-	-	4e+0	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig10312_at	Contig10312	-	-	4e-1	At4g36130	60S ribosomal protein L8 (RPL8C)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12524_at	Contig12524	-	-	5e-1	At1g05310	pectinesterase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig10268_at	Contig10268	-	-	3e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6705_at	Contig6705	-	-	2e-20	At3g17810	dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6589_at	Contig6589	-	-	1e-9	At1g14570	UBX domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig2848_at	Contig2848	-	-	4e-8	At1g44910	protein binding	C.G.	S.X.	Please select
0.02	3e+0	32	AF032687_at	AF032687	-	-	2e+0	At3g52130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10748_at	Contig10748	-	-	1e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-2	38	Arabidopsis thaliana	At4g33360	829473	terpene cyclase/mutase-related	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, terpenoid metabolic process, metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPFMAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	8e-6	52	Glycine max	GmaAffx.90454.1.A1_at	CF808712	-	-	5e-23	At2g39990	EIF2	C.G.	S.X.	Please select
0.54	7e-112	404	Oryza sativa	Os05g0104800	AK070215.1	-	Eukaryotic translation initiation factor 3 subunit5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)	6e-4	At2g39990	EIF2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-4	48	Populus trichocarpa	Ptp.2051.1.S1_at	CV243394	hypothetical protein	-	2e-16	At2g39990	EIF2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	0	985	Triticum aestivum	Ta.30743.1.S1_at	CK169502	-	-	7e-1	At2g39990	EIF2	C.G.	S.X.	Please select
0.14	2e-6	52	Vitis vinifera	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	C.G.	S.X.	Please select
0.33	1e-66	252	Zea mays	Zm.5273.1.A1_at	BM497669	hypothetical protein LOC100272886	-	7e-1	At2g39990	EIF2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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