CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5953_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig5953_at Contig5953 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) S.X. H.G.
0.80 92.5 Contig4425_at Contig4425 - - 5e+0 At5g14670 ATARFA1B (ADP-ribosylation factor A1B) S.X. H.G.
0.73 88.7 Contig4593_at Contig4593 - - 9e-10 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
0.62 79.1 Contig4017_at Contig4017 - - 1e+0 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) S.X. H.G.
0.61 78.7 Contig7364_at Contig7364 - - 5e-13 At3g10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) S.X. H.G.
0.61 78.7 Contig2932_at Contig2932 - - 2e-4 At5g21090 leucine-rich repeat protein, putative S.X. H.G.
0.60 77.3 Contig16444_at Contig16444 - - 4e+0 At5g54980 integral membrane family protein S.X. H.G.
0.60 77.3 Contig22054_at Contig22054 - - 8e-2 At2g02440 unknown protein S.X. H.G.
0.53 69.7 Contig22786_at Contig22786 - - 9e+0 At5g36710 unknown protein S.X. H.G.
0.52 68.3 Contig25159_at Contig25159 - - 8e-12 At2g35800 mitochondrial substrate carrier family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.2 99.8 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
23.2 99.8 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
13.8 99.5 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
13.8 99.5 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
12.9 99.4 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
12.9 99.4 GSM440958 Control lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
10.4 99.2 GSM419979 Awn_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
10.4 99.2 GSM440970 Control awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
10.2 99.1 GSM419980 Awn_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
10.2 99.1 GSM440971 Control awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-8 59 Contig8572_s_at Contig8572 - - 1e-1 At1g47970 unknown protein C.G. S.X.
0.08 7e-8 57 Contig5952_at Contig5952 - - 4e-1 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.03 7e-2 38 Contig24881_s_at Contig24881 - - 5e-2 At1g75340 zinc finger (CCCH-type) family protein C.G. S.X.
0.01 3e-1 36 Contig13671_at Contig13671 - - 1e-14 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) C.G. S.X.
0.03 3e-1 36 Contig5091_at Contig5091 - - 4e+0 At5g47080 CKB1 C.G. S.X.
0.02 3e-1 36 Contig5092_s_at Contig5092 - - 1e+0 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.02 1e+0 34 Contig21927_at Contig21927 - - 1e-4 At1g73660 protein kinase family protein C.G. S.X.
0.01 1e+0 34 Contig2556_s_at Contig2556 - - 1e-9 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.02 1e+0 34 Contig26118_s_at Contig26118 - - 1e+0 At5g36280 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-10 67 Arabidopsis thaliana At1g10470 837587 ARR4 (RESPONSE REGULATOR 4) Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. - - - C.G. S.X.
0.21 1e-5 52 Glycine max GmaAffx.35033.1.S1_at BI969048 - - 6e-3 At2g41310 ATRR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.48 4e-77 289 Oryza sativa Os11g0143300 AK058585.1 - - 5e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.20 2e-7 57 Populus trichocarpa PtpAffx.206072.1.S1_at pmrna12034 type-a response regulator - 5e-37 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.84 0 1027 Triticum aestivum Ta.10408.1.S1_at CN009026 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) C.G. S.X.
0.04 3e-9 61 Vitis vinifera 1608140_at CF211124 hypothetical protein LOC100258759 - 2e-16 At3g48100 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) C.G. S.X.
0.33 2e-69 262 Zea mays Zm.325.1.A1_at AB042268.1 response regulator 6 - 2e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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