Gene omics information

Query gene ID	Contig5933_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig5933_at	Contig5933	-	-	2e-6	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select
0.60	77.3	Contig13060_at	Contig13060	-	-	5e-10	At4g10060	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.38	49.5	Contig10497_at	Contig10497	-	-	2e-1	At4g17720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.30	37.0	Contig4415_at	Contig4415	-	-	3e-1	At2g18490	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.21	22.6	Contig24940_at	Contig24940	-	-	1e+0	At4g12000	-	S.X.	H.G.	Please select
0.17	16.9	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.5	99.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.3	99.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.7	99.5	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.8	99.3	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
9.2	99.0	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.9	98.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.2	98.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.7	98.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.5	98.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.4	98.1	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	1136	Contig5934_s_at	Contig5934	-	-	5e-3	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.01	7e-2	38	Contig6713_at	Contig6713	-	-	2e-1	At3g09350	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig4487_s_at	Contig4487	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	EBro08_SQ009_J21_at	EBro08_SQ009_J21	-	-	8e-1	At3g19090	RNA-binding protein, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Contig8128_at	Contig8128	-	-	4e-31	At5g01240	amino acid permease, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8443_at	Contig8443	-	-	4e-3	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8443_s_at	Contig8443	-	-	4e-3	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12302_at	Contig12302	-	-	1e-2	At5g62440	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-6	54	Arabidopsis thaliana	At5g35620	833534	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	6e-14	79	Glycine max	GmaAffx.10709.1.S1_at	BE657216	-	-	4e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.39	9e-165	581	Oryza sativa	Os10g0467600	U34598.1	-	Eukaryotic translation initiation factor 4E-2(eIF4E-2) (eIF-4E-2) (mRNA cap-binding protein)(eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit)	1e-11	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	4e-12	73	Populus trichocarpa	PtpAffx.11646.1.S1_at	CV258006	hypothetical protein	-	2e-19	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1229	Triticum aestivum	Ta.1317.1.S1_at	M95818.1	initiation factor (iso)4F p28 subunit	-	7e-7	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.08	4e-8	57	Vitis vinifera	1617268_at	CF205684.1	hypothetical protein LOC100259631	-	4e-13	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.34	1e-92	339	Zea mays	Zm.6439.1.A1_at	AF076955.1	eucaryotic initiation factor7	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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