Gene omics information

Query gene ID Contig5909_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6279.1Contig5909_atContig5909--4e-12At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)S.X.H.G.
0.8995.4Contig3568_atContig3568iron/ascorbate-dependent oxidoreductase-7e-4At1g49390oxidoreductase, 2OG-Fe(II) oxygenase family proteinS.X.H.G.
0.8795.0Contig590_atContig590--1e+0At4g09840unknown proteinS.X.H.G.
0.8192.8Contig4061_atContig4061--2e-2At4g17670senescence-associated protein-relatedS.X.H.G.
0.7891.2Contig9239_s_atContig9239--3e-1At4g00330CRCK2S.X.H.G.
0.7891.2Contig4058_s_atContig4058--2e+0At5g42070unknown proteinS.X.H.G.
0.7891.2Contig3638_atContig3638--7e-9At5g21090leucine-rich repeat protein, putativeS.X.H.G.
0.7790.8Contig3567_atContig3567--1e-2At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinS.X.H.G.
0.7790.8Contig7366_s_atContig7366--3e-1At3g55450protein kinase, putativeS.X.H.G.
0.7689.8Contig6014_atContig6014--5e+0At5g38540jacalin lectin family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.598.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.397.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.897.0GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.596.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.196.2GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.196.2GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barley
4.096.0GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.995.8GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.995.8GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.795.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-30133Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)C.G.S.X.
0.095e-1375HVSMEc0015C10r2_atHVSMEc0015C10r2--1e-9At5g06950AHBP-1BC.G.S.X.
0.032e-654Contig16432_atContig16432--1e-2At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.014e-136Contig14958_atContig14958--7e-1At1g48960universal stress protein (USP) family proteinC.G.S.X.
0.024e-136Contig17958_atContig17958--2e+0At5g40370glutaredoxin, putativeC.G.S.X.
0.012e+034A06498.1_s_atA06498.1--9e-1At4g28350lectin protein kinase family proteinC.G.S.X.
0.022e+034Contig13368_atContig13368--5e+0At5g38890exoribonuclease-relatedC.G.S.X.
0.012e+034Contig18115_atContig18115--2e-2At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)C.G.S.X.
0.012e+034Contig11318_atContig11318--7e-40At5g20020RAN2C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.194e-1273Arabidopsis thalianaAt3g12250820405TGA6 (TGACG MOTIF-BINDING FACTOR 6)basic leucine zipper transcription factor involved in the activation of SA-responsive genes.---C.G.S.X.
0.251e-21105Glycine maxGma.7757.1.S1_atBG510691transcription factor bZIP95-1e-14At5g06950AHBP-1BC.G.S.X.
0.562e-139498Oryza sativaOs01g0279900AB051296.1-Basic-leucine zipper (bZIP) transcription factordomain containing protein6e-11At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.206e-21103Populus trichocarpaPtpAffx.143760.1.S1_atBU872292hypothetical protein-4e-22At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.6601406Triticum aestivumTa.808.1.S1_atBJ217235HBP-1b-2e-5At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.135e-1581Vitis vinifera1609185_atCB972681similar to TGA-type basic leucine zipper protein TGA2.2-2e-6At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.231e-1067Zea maysZm.128.1.S1_s_atX69152.1ocs-element binding factor 3.1 /// octopine synthase binding factor3-2e-1At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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