Gene omics information

Query gene ID	Contig5893_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	S.X.	H.G.	Please select
0.61	78.7	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select
0.55	72.0	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.50	66.9	Contig24940_at	Contig24940	-	-	1e+0	At4g12000	-	S.X.	H.G.	Please select
0.38	49.5	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	S.X.	H.G.	Please select
0.36	47.1	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.2	96.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.82	0	2311	Contig5892_at	Contig5892	-	-	1e-43	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please select
0.01	4e-1	36	Contig18407_at	Contig18407	-	-	2e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5484_at	Contig5484	-	-	1e-6	At5g13800	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig1168_at	Contig1168	-	-	7e-10	At4g28450	nucleotide binding / protein binding	C.G.	S.X.	Please select
0.01	4e-1	36	Contig632_s_at	Contig632	-	-	1e-27	At3g44110	ATJ3	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8494_at	Contig8494	molybdenum cofactor biosynthesis protein Cnx1	-	5e-3	At5g20990	B73	C.G.	S.X.	Please select
0.02	2e+0	34	Contig11919_at	Contig11919	-	-	2e+0	At3g45275	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2537_at	Contig2537	-	-	1e-29	At3g11730	ATFP8	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1852_at	Contig1852	-	-	1e-2	At5g40150	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	1e-52	208	Arabidopsis thaliana	At1g04170	839238	EIF2 GAMMA	protein synthesis initiation factor eIF2 gamma	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	3e-72	274	Glycine max	GmaAffx.75790.1.S1_at	BE347476	-	-	7e-59	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please select
0.72	0	1572	Oryza sativa	Os12g0176800	AK069023.1	-	Eukaryotic translation initiation factor 2 gammasubunit (eIF-2-gamma) (Suppressor of variegation protein3-9). Splice isoform C	4e-71	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	3e-66	254	Populus trichocarpa	PtpAffx.203135.1.S1_at	pmrna6216	hypothetical protein	-	1e-49	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	2399	Triticum aestivum	Ta.2663.1.S1_at	CD373627	-	-	3e-50	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please select
0.24	1e-15	83	Vitis vinifera	1615084_at	CB342911	hypothetical protein LOC100252857	-	8e-9	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please select
0.68	0	1338	Zea mays	Zm.6871.2.A1_a_at	CF632127	hypothetical protein LOC100217157	-	6e-79	At1g04170	EIF2 GAMMA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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