CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5865_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 80.9 Contig5865_at Contig5865 - - 2e+1 At5g04267 unknown protein S.X. H.G.
0.53 69.7 Contig4469_at Contig4469 - - 4e-63 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) S.X. H.G.
0.43 56.4 Contig1122_s_at Contig1122 - - 1e-22 At1g07790 HTB1 S.X. H.G.
0.38 49.5 Contig9715_s_at Contig9715 - - 8e+0 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) S.X. H.G.
0.32 40.3 Contig6456_s_at Contig6456 - - 4e+0 At3g16120 dynein light chain, putative S.X. H.G.
0.31 38.6 Contig6438_s_at Contig6438 - - 6e-1 At2g44581 protein binding / zinc ion binding S.X. H.G.
0.29 35.5 Contig370_at Contig370 - - 3e-23 At5g60390 elongation factor 1-alpha / EF-1-alpha S.X. H.G.
0.27 32.1 Contig4853_at Contig4853 - - 3e-17 At2g39800 P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) S.X. H.G.
0.26 30.4 Contig19041_at Contig19041 - - 5e+0 At4g22850 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.5 98.8 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9 97.9 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9 97.9 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4 97.5 GSM261075 Albina e-16 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9 97.1 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8 97.0 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6 96.8 GSM261057 Xantha b-12 Cotrol rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5 96.7 GSM261063 Xantha s-46 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-129 460 Contig5866_at Contig5866 - - 3e-63 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.12 6e-7 54 Contig12347_s_at Contig12347 - - 1e-10 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.12 6e-7 54 Contig12347_at Contig12347 - - 1e-10 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.11 6e-4 44 Contig12346_at Contig12346 - - 3e-1 At3g24515 UBC37 (ubiquitin-conjugating enzyme 37) C.G. S.X.
0.03 1e-1 36 Contig7785_at Contig7785 - - 3e-14 At4g28050 TET7 (TETRASPANIN7) C.G. S.X.
0.01 6e-1 34 Contig5196_at Contig5196 - - 2e-24 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
0.03 6e-1 34 HD01O20w_at HD01O20w - - 5e+0 At4g22520 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 6e-1 34 EBro08_SQ012_G23_at EBro08_SQ012_G23 - - 2e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 6e-1 34 Contig14716_at Contig14716 - - 7e-7 At1g30820 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+1 30 Arabidopsis thaliana At5g04267 6241469 unknown protein F:unknown;P:unknown;C:unknown - - - C.G. S.X.
0.05 3e-2 40 Glycine max GmaAffx.87872.1.S1_at BM885036 - - 5e-38 At1g30820 CTP synthase, putative / UTP--ammonia ligase, putative C.G. S.X.
0.08 1e-29 131 Oryza sativa Os.16523.1.S1_at - - - 0 C.G. S.X.
0.06 3e-2 40 Populus trichocarpa PtpAffx.7903.2.A1_at DN486357 hypothetical protein - 3e-7 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
0.44 3e-41 169 Triticum aestivum TaAffx.35343.1.S1_at BQ609232 - - 3e+0 At4g32020 unknown protein C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1622827_at CF213249 hypothetical protein LOC100245850 - 3e+0 At2g41470 unknown protein C.G. S.X.
0.11 2e-19 95 Zea mays Zm.2488.1.A1_at CK985671 CTP synthase - 1e-1 At3g12670 emb2742 (embryo defective 2742) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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