Gene omics information

Query gene ID	Contig5857_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig5857_s_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig7815_s_at	Contig7815	-	-	2e-5	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	S.X.	H.G.	Please select
0.67	84.7	Contig19484_at	Contig19484	-	-	3e-2	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	S.X.	H.G.	Please select
0.59	75.8	Contig24881_s_at	Contig24881	-	-	5e-2	At1g75340	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.55	72.0	Contig9932_at	Contig9932	-	-	6e-7	At5g03530	RABC2A (RAB GTPASE HOMOLOG C2A)	S.X.	H.G.	Please select
0.40	53.1	Contig12827_at	Contig12827	-	-	8e-1	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.1	96.2	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
4.0	96.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2787	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	C.G.	S.X.	Please select
0.57	0	1013	Contig5859_at	Contig5859	-	-	1e+0	At5g36910	THI2.2 (THIONIN 2.2)	C.G.	S.X.	Please select
0.54	6e-154	543	Contig5856_at	Contig5856	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig8708_at	Contig8708	-	-	2e-1	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.01	9e-2	38	Contig3146_at	Contig3146	-	-	2e-5	At1g58290	HEMA1	C.G.	S.X.	Please select
0.02	9e-2	38	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	C.G.	S.X.	Please select
0.02	9e-2	38	Contig1750_at	Contig1750	-	-	2e-2	At1g15270	-	C.G.	S.X.	Please select
0.02	9e-2	38	Contig17937_at	Contig17937	-	-	6e+0	At4g36110	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Contig12767_at	Contig12767	-	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At1g02965	839537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.CL1093Contig1_at	PsAffx.CL1093Contig1	-	-	4e-1	At2g23320	WRKY15	C.G.	S.X.	Please select
0.49	1e-164	581	Oryza sativa	Os.39957.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e-5	50	Populus trichocarpa	PtpAffx.200806.1.S1_at	pmrna1580	hypothetical protein	-	6e-20	At3g46220	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	0	833	Triticum aestivum	Ta.5052.1.A1_at	BJ261727	-	-	2e+0	At4g24420	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1612919_at	CB971032	-	-	4e+0	At2g33510	protein binding	C.G.	S.X.	Please select
0.02	2e-2	40	Zea mays	Zm.14226.1.A1_at	BM337251	hypothetical protein LOC100273457	-	3e-2	At3g20100	CYP705A19	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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