Gene omics information

Query gene ID	Contig5853_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig5853_at	Contig5853	-	-	3e-1	At1g64140	-	S.X.	H.G.	Please select
0.71	87.1	EBma04_SQ003_K13_s_at	EBma04_SQ003_K13	-	-	2e+0	At3g60520	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig6461_s_at	Contig6461	-	-	7e-17	At1g52360	coatomer protein complex, subunit beta 2 (beta prime), putative	S.X.	H.G.	Please select
0.63	80.3	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.56	74.3	Contig3526_at	Contig3526	-	-	1e-3	At1g11910	aspartyl protease family protein	S.X.	H.G.	Please select
0.50	66.9	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.35	45.1	Contig3878_at	Contig3878	-	-	9e-6	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-3	44	Contig18548_at	Contig18548	-	-	6e-1	At5g55000	FIP2	C.G.	S.X.	Please select
0.05	1e-2	42	Contig9167_at	Contig9167	-	-	2e-4	At5g64550	loricrin-related	C.G.	S.X.	Please select
0.01	2e-1	38	Contig12954_at	Contig12954	-	-	1e+0	At2g25060	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.01	6e-1	36	EBro02_SQ007_A14_at	EBro02_SQ007_A14	-	-	7e-1	At1g03960	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Contig24271_at	Contig24271	-	-	2e+0	At3g13710	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	C.G.	S.X.	Please select
0.01	6e-1	36	Contig10968_at	Contig10968	-	-	4e-15	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	C.G.	S.X.	Please select
0.01	6e-1	36	HVSMEc0010O09r2_at	HVSMEc0010O09r2	-	-	1e+0	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.01	6e-1	36	HZ01L14u_at	HZ01L14u	-	-	1e+0	Atmg00550	-	C.G.	S.X.	Please select
0.01	6e-1	36	Contig6728_at	Contig6728	-	-	6e-1	At5g23030	TET12 (TETRASPANIN12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-1	38	Arabidopsis thaliana	At1g64140	842718	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	36	Glycine max	PsAffx.C13000046_at	PsAffx.C13000046	-	-	6e+0	Atcg00150	-	C.G.	S.X.	Please select
0.51	0	666	Oryza sativa	Os01g0621900	AK101393.1	-	-	1e-7	At5g64550	loricrin-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-6	56	Populus trichocarpa	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.87	0	2934	Triticum aestivum	Ta.9284.1.S1_x_at	BE430259	-	-	6e-6	At1g64140	-	C.G.	S.X.	Please select
0.08	3e-5	50	Vitis vinifera	1614392_at	CF207745	hypothetical protein LOC100249189	-	2e-26	At5g64550	loricrin-related	C.G.	S.X.	Please select
0.20	3e-30	133	Zea mays	Zm.17100.1.S1_a_at	CF972476	hypothetical protein LOC100217230	-	2e-6	At5g64550	loricrin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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