Gene omics information

Query gene ID	Contig5845_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	95.0	Contig5845_at	Contig5845	-	-	3e-3	At2g34510	-	S.X.	H.G.	Please select
0.63	80.3	Contig11807_at	Contig11807	-	-	3e-1	At2g37390	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.54	70.3	HVSMEf0013J01r2_at	HVSMEf0013J01r2	-	-	2e-2	At2g39415	F-box family protein	S.X.	H.G.	Please select
0.51	67.5	Contig14057_at	Contig14057	-	-	6e-1	At5g14980	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig588_at	Contig588	-	-	6e-29	At5g36790	phosphoglycolate phosphatase, putative	S.X.	H.G.	Please select
0.49	63.7	Contig191_at	Contig191	-	-	7e-6	At2g33740	CUTA	S.X.	H.G.	Please select
0.49	63.7	Contig19980_at	Contig19980	-	-	1e+0	At2g20160	MEO (MEIDOS)	S.X.	H.G.	Please select
0.49	63.7	Contig18967_at	Contig18967	-	-	7e-25	At3g03940	protein kinase family protein	S.X.	H.G.	Please select
0.47	62.2	Contig15941_at	Contig15941	-	-	2e-1	At2g38820	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HX14B03r_at	HX14B03r	-	-	2e-2	At1g09190	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.8	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.0	99.6	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.6	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.6	99.6	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.4	99.5	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.3	99.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.7	99.5	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.6	99.4	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2	99.1	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-6	52	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	Contig2474_at	Contig2474	-	-	2e-1	At1g80240	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig7802_at	Contig7802	-	-	4e-9	At2g37500	arginine biosynthesis protein ArgJ family	C.G.	S.X.	Please select
0.01	1e-1	38	Contig16091_at	Contig16091	-	-	4e-2	At3g03750	SET domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig14555_s_at	Contig14555	-	-	2e-2	At1g73630	calcium-binding protein, putative	C.G.	S.X.	Please select
0.02	4e-1	36	Contig17507_at	Contig17507	-	-	2e+0	At3g05350	aminopeptidase/ hydrolase	C.G.	S.X.	Please select
0.02	4e-1	36	HI02A12u_at	HI02A12u	-	-	5e+0	At5g03750	-	C.G.	S.X.	Please select
0.02	4e-1	36	Contig19270_at	Contig19270	-	-	2e+0	At1g04970	lipid-binding serum glycoprotein family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig16510_at	Contig16510	-	-	9e+0	At5g18540	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-3	44	Arabidopsis thaliana	At2g34510	818014	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.C88000021_at	PsAffx.C88000021	-	-	5e+0	At1g08820	VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2)	C.G.	S.X.	Please select
0.65	2e-157	557	Oryza sativa	Os01g0756600	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.5104.1.A1_at	CV261488	-	-	2e-2	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	1667	Triticum aestivum	Ta.2840.1.S1_at	BJ311413	-	-	4e+0	At1g58007	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	40	Vitis vinifera	1613254_at	CF568816	-	-	7e-8	At1g29980	-	C.G.	S.X.	Please select
0.51	0	755	Zea mays	Zm.2385.2.A1_a_at	AY111554.1	DNA-binding protein	-	1e-15	At2g34510	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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