Gene omics information

Query gene ID	Contig5809_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	S.X.	H.G.	Please select
0.78	91.2	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	S.X.	H.G.	Please select
0.78	91.2	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	S.X.	H.G.	Please select
0.71	87.1	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	S.X.	H.G.	Please select
0.67	84.7	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	S.X.	H.G.	Please select
0.67	84.7	Contig2772_s_at	Contig2772	-	-	4e-50	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	S.X.	H.G.	Please select
0.61	78.7	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select
0.58	74.9	Contig5490_at	Contig5490	-	-	3e-1	At3g14680	CYP72A14	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.4	99.6	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.0	99.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.1	99.2	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
6.1	98.0	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
5.5	97.6	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM398266	HS41-1_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3	97.4	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM398268	HS41-1_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	0	698	rbags16h12_s_at	rbags16h12	-	-	9e-1	At2g04066	MATE efflux protein-related	C.G.	S.X.	Please select
0.39	0	698	rbags16h12_at	rbags16h12	-	-	9e-1	At2g04066	MATE efflux protein-related	C.G.	S.X.	Please select
0.01	4e-1	36	Contig2185_at	Contig2185	-	-	4e-99	At1g06430	FTSH8	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5442_at	Contig5442	-	-	4e-107	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.02	2e+0	34	Contig15074_at	Contig15074	-	-	4e+0	At2g27160	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig13871_at	Contig13871	-	-	2e+0	At4g35840	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2949_s_at	Contig2949	-	-	1e-21	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2454_at	Contig2454	phospholipid hydroperoxide glutathione peroxidase-like protein	-	5e-72	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.01	2e+0	34	HW01F10u_s_at	HW01F10u	-	-	1e-24	At1g50370	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	2e-14	81	Arabidopsis thaliana	At1g58440	842213	XF1	Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-22	109	Glycine max	GmaAffx.20777.1.S1_at	BE819900	-	-	4e-8	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select
0.61	0	1400	Oryza sativa	Os03g0231800	AK065032.1	-	XF1 protein (Squalene monooxygenase, putative)	1e-18	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	1e-46	188	Populus trichocarpa	PtpAffx.205391.1.S1_at	pmrna10677	hypothetical protein	-	3e-68	At1g58440	XF1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	2422	Triticum aestivum	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.10	7e-5	48	Vitis vinifera	1616202_at	BQ792867	hypothetical protein LOC100262930	-	1e-3	At1g58440	XF1	C.G.	S.X.	Please select
0.58	0	827	Zea mays	Zm.7407.1.A1_a_at	BM074289	squalene monooxygenase	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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