CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5807_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 93.1 Contig5807_s_at Contig5807 - - 2e-1 At1g52330 unknown protein S.X. H.G.
0.63 80.3 Contig13661_at Contig13661 - - 2e+0 At2g32885 - S.X. H.G.
0.46 61.0 Contig2613_s_at Contig2613 - - 8e-13 At2g41840 40S ribosomal protein S2 (RPS2C) S.X. H.G.
0.44 58.9 Contig2849_at Contig2849 - - 2e-1 At1g23170 unknown protein S.X. H.G.
0.43 56.4 HI02E24u_s_at HI02E24u - - 8e-36 At2g36620 RPL24A (ribosomal protein L24) S.X. H.G.
0.42 55.2 Contig5936_at Contig5936 - - 4e-24 At1g63000 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) S.X. H.G.
0.36 47.1 Contig15472_at Contig15472 - - 1e+1 At5g43170 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) S.X. H.G.
0.28 35.5 Contig23141_at Contig23141 - - 1e+0 At2g42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) S.X. H.G.
0.23 26.1 Contig3243_x_at Contig3243 - - 6e-4 At1g44970 peroxidase, putative S.X. H.G.
0.19 19.6 Contig23027_at Contig23027 - - 1e-1 At3g26790 FUS3 (FUSCA 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.6 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
7.4 98.5 GSM261023 ABA-Control-rep3 GSE10328 ABA experiment
6.2 98.0 GSM261056 Xantha b-12 Cotrol rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
5.8 97.8 GSM261062 Xantha s-46 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6 97.7 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
5.5 97.6 GSM68905 27 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
5.4 97.5 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1 97.3 GSM261031 Dicktoo-control-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.1 97.3 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 0 777 Contig5808_at Contig5808 - - 2e+0 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.42 3e-45 180 HVSMEn0020G09f_s_at HVSMEn0020G09f - - 9e-1 At2g20540 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.08 7e-9 59 Contig4435_at Contig4435 - - 2e-3 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.06 4e-4 44 Contig9075_s_at Contig9075 - - 1e-1 At5g59990 - C.G. S.X.
0.10 4e-4 44 Contig4433_s_at Contig4433 - - 2e-5 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.10 4e-4 44 Contig4433_at Contig4433 - - 2e-5 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 6e-3 40 Contig10718_at Contig10718 - - 2e-7 At1g78440 ATGA2OX1 (gibberellin 2-oxidase 1) C.G. S.X.
0.04 3e-2 38 EBan01_SQ002_F13_at EBan01_SQ002_F13 - - 3e-1 At3g52230 unknown protein C.G. S.X.
0.04 3e-2 38 Contig3783_at Contig3783 - - 4e-1 At2g30766 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 36 Arabidopsis thaliana At1g52330 841664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 1e+0 34 Glycine max Gma.7012.3.S1_at BF597272 - - 1e+1 At5g65130 AP2 domain-containing transcription factor, putative C.G. S.X.
0.08 1e-10 67 Oryza sativa Os02g0662000 AK109149.1 - RCc3 protein 1e-1 At2g25820 transcription factor C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.212152.1.S1_s_at pmrna23830 hypothetical protein - 9e-1 At5g09690 magnesium transporter CorA-like family protein (MRS2-7) C.G. S.X.
0.61 2e-32 139 Triticum aestivum Ta.10201.3.S1_at BQ169510 - - 4e+0 At5g23035 - C.G. S.X.
0.05 4e+0 30 Vitis vinifera 1614394_x_at CF206363.1 - - 6e+0 At5g48657 defense protein-related C.G. S.X.
0.11 3e-14 77 Zea mays Zm.3427.1.A1_at AY108411.1 cortical cell-delineating protein - 9e-2 At4g12545 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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