CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5793_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 92.8 Contig5793_at Contig5793 - - 1e-1 At5g23950 C2 domain-containing protein S.X. H.G.
0.86 94.8 Contig18801_at Contig18801 - - 2e+0 At3g63233 unknown protein S.X. H.G.
0.86 94.8 Contig9403_at Contig9403 - - 3e-3 At3g09850 D111/G-patch domain-containing protein S.X. H.G.
0.86 94.8 Contig11611_at Contig11611 - - 4e-1 At5g65060 MAF3 (MADS AFFECTING FLOWERING 3) S.X. H.G.
0.85 94.5 Contig25005_at Contig25005 - - 4e+0 At2g28480 RNA binding S.X. H.G.
0.83 94.0 Contig6842_at Contig6842 - - 2e-4 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) S.X. H.G.
0.83 94.0 Contig4883_at Contig4883 - - 2e-4 At4g38220 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative S.X. H.G.
0.81 92.8 Contig13000_at Contig13000 - - 8e-58 At1g10950 endomembrane protein 70, putative S.X. H.G.
0.78 91.2 Contig19710_at Contig19710 - - 9e-11 At3g10550 phosphatase/ protein tyrosine phosphatase S.X. H.G.
0.78 91.2 Contig6571_at Contig6571 - - 6e-10 At3g55520 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 98.9 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
6.6 98.2 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
6.2 98.0 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.5 97.6 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7 96.9 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM68902 27 h control replicate 2 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.0 96.0 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 3e-157 553 Contig5794_s_at Contig5794 - - 7e-3 At1g47970 unknown protein C.G. S.X.
0.02 5e-2 38 Contig6370_at Contig6370 - - 9e-9 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.04 5e-2 38 Contig3898_at Contig3898 - - 1e-7 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.02 5e-2 38 Contig609_at Contig609 - - 7e+0 At2g04420 nucleic acid binding C.G. S.X.
0.02 2e-1 36 Contig4619_at Contig4619 - - 2e+0 At3g44140 unknown protein C.G. S.X.
0.03 2e-1 36 Contig18098_at Contig18098 - - 5e+0 At5g26890 unknown protein C.G. S.X.
0.03 2e-1 36 Contig1521_at Contig1521 - - 6e-2 At2g31840 - C.G. S.X.
0.03 2e-1 36 EBem05_SQ003_O11_at EBem05_SQ003_O11 - - 1e+0 At5g63740 zinc finger protein-related C.G. S.X.
0.02 2e-1 36 Contig13307_at Contig13307 - - 5e-1 At5g23940 EMB3009 (embryo defective 3009) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At5g23950 832460 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA - - - C.G. S.X.
0.03 6e-1 36 Glycine max GmaAffx.91206.1.S1_x_at CF806931 - - 2e-24 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.08 5e-2 40 Oryza sativa Os.54502.1.S1_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.213846.1.S1_at pmrna27014 hypothetical protein - 1e-1 At3g04310 unknown protein C.G. S.X.
0.52 1e-99 363 Triticum aestivum Ta.28822.1.S1_s_at CK196856 - - 9e+0 At5g46013 unknown protein C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1620054_at CF214049 hypothetical protein LOC100259508 - 1e-3 At1g47970 unknown protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.4935.1.A1_at AI586495 - - 3e-1 At5g49230 HRB1 (HYPERSENSITIVE TO RED AND BLUE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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