Gene omics information

Query gene ID	Contig5778_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	S.X.	H.G.	Please select
0.67	84.7	Contig4880_x_at	Contig4880	-	-	2e-20	At1g61800	GPT2	S.X.	H.G.	Please select
0.59	75.8	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	S.X.	H.G.	Please select
0.50	66.9	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	S.X.	H.G.	Please select
0.50	66.9	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.26	30.4	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
95.8	100.0	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
80.4	100.0	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
73.5	100.0	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
58.1	100.0	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
53.9	100.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
37.0	99.9	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
0.8	71.7	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
0.7	68.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
0.6	65.6	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
0.5	61.9	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.84	0	1679	Contig5780_at	Contig5780	-	-	4e-8	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig15152_at	Contig15152	-	-	3e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig12420_at	Contig12420	-	-	8e-25	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig15320_at	Contig15320	-	-	6e-1	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig18440_at	Contig18440	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig7951_at	Contig7951	-	-	5e-1	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18562_at	Contig18562	-	-	2e+0	At3g51100	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6935_at	Contig6935	-	-	2e-5	At5g27540	MIRO1 (Miro-related GTP-ase 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14965_at	Contig14965	-	-	2e-6	At5g19910	SOH1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-10	67	Arabidopsis thaliana	At4g22260	828321	IM (IMMUTANS)	Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-12	73	Glycine max	GmaAffx.88838.1.S1_at	CK605845	-	-	2e-56	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select
0.35	7e-135	482	Oryza sativa	Os04g0668900	AF085174.3	-	Oxidase (OSJNBa0043A12.16 protein)	4e-34	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	7e-14	79	Populus trichocarpa	PtpAffx.16052.1.S1_a_at	DN491642	hypothetical protein	-	9e-68	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	892	Triticum aestivum	Ta.251.1.S1_at	AF274001.1	-	-	3e-9	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1617294_at	CF203869.1	-	-	3e-23	At1g23740	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please select
0.26	2e-48	192	Zea mays	ZmAffx.758.1.A1_at	AI746000	hypothetical protein LOC100273671	-	3e-3	At4g22260	IM (IMMUTANS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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