Gene omics information

Query gene ID	Contig5753_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig5753_at	Contig5753	-	-	3e-1	At1g04501	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig5286_at	Contig5286	-	-	6e-1	At2g44310	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.50	66.9	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig4747_at	Contig4747	-	-	2e+0	At2g05620	PGR5 (proton gradient regulation 5)	S.X.	H.G.	Please select
0.44	58.9	Contig5257_at	Contig5257	-	-	1e+0	At4g00200	DNA binding	S.X.	H.G.	Please select
0.38	49.5	HB24H11r_s_at	HB24H11r	-	-	8e-1	At3g10590	myb family transcription factor	S.X.	H.G.	Please select
0.29	35.5	Contig4846_at	Contig4846	-	-	4e-1	At2g42040	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.0	99.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
14.2	99.5	GSM160464	drought control rep1	GSE6990	Barley drought stress
11.8	99.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
11.2	99.2	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
9.8	99.1	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
9.4	99.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
8.9	98.9	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
7.8	98.6	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
7.3	98.5	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.3	98.5	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	954	Contig5754_at	Contig5754	-	-	3e-2	At1g13380	unknown protein	C.G.	S.X.	Please select
0.69	0	954	Contig5754_s_at	Contig5754	-	-	3e-2	At1g13380	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig12706_at	Contig12706	-	-	7e+0	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	1e-1	36	Contig20066_at	Contig20066	-	-	5e+0	At5g39520	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig20941_at	Contig20941	-	-	7e-1	At5g66590	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please select
0.02	5e-1	34	X84055_at	X84055	-	-	7e-10	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig3141_s_at	Contig3141	-	-	2e-27	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig3141_at	Contig3141	-	-	2e-27	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-1	36	Arabidopsis thaliana	At1g04501	6240795	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.93551.1.S1_at	CF809276	-	-	2e-29	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.23	3e-30	133	Oryza sativa	Os07g0462200	AK059964.1	-	Protein of unknown function DUF1218 family protein	3e-2	At1g13380	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.213129.1.S1_at	pmrna25694	hypothetical protein	-	5e+0	At5g40000	AAA-type ATPase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	1e-80	299	Triticum aestivum	Ta.12561.1.S1_at	CK196288	-	-	3e-2	At1g13380	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1613893_at	CB005461	hypothetical protein LOC100250827	-	1e+0	At3g22183	unknown protein	C.G.	S.X.	Please select
0.08	2e-16	85	Zea mays	Zm.4144.1.S1_at	AY104561.1	-	-	5e-1	At1g62421	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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