CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig5728_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 74.3 Contig5728_at Contig5728 - - 1e-15 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) S.X. H.G.
0.67 84.7 Contig6431_at Contig6431 - - 3e-1 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative S.X. H.G.
0.60 77.3 Contig6433_at Contig6433 - - 5e-1 At5g66460 (1-4)-beta-mannan endohydrolase, putative S.X. H.G.
0.55 72.0 Contig2718_s_at Contig2718 - - 4e-27 At3g25230 ROF1 (ROTAMASE FKBP 1) S.X. H.G.
0.55 72.0 HVSMEb0006I05f_x_at HVSMEb0006I05f - - 8e-1 At5g19930 integral membrane family protein S.X. H.G.
0.17 16.9 Contig9794_at Contig9794 - - 4e-1 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 99.1 GSM398275 Moroc9-75_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.6 99.0 GSM398283 Moroc9-75_5d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.2 99.0 GSM398249 Martin_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.9 98.9 GSM398273 Moroc9-75_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.8 98.9 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.6 98.8 GSM398274 Moroc9-75_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.3 98.8 GSM398250 Martin_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2 98.5 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.1 98.4 GSM398260 Martin_5d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.8 98.3 GSM398281 Moroc9-75_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-5 50 Contig11712_at Contig11712 - - 3e-18 At5g10070 RNase L inhibitor protein-related C.G. S.X.
0.02 1e-4 48 Contig6933_s_at Contig6933 - - 3e-1 At3g56340 40S ribosomal protein S26 (RPS26C) C.G. S.X.
0.05 4e-4 46 HVSMEl0002I24r2_at HVSMEl0002I24r2 - - 1e+0 At2g29310 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.02 2e-3 44 Contig9924_at Contig9924 - - 2e-1 At3g01470 ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1) C.G. S.X.
0.01 6e-3 42 Contig16153_at Contig16153 - - 1e+0 At1g27760 interferon-related developmental regulator family protein / IFRD protein family C.G. S.X.
0.01 3e-2 40 Contig21148_at Contig21148 - - 3e-5 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.02 3e-2 40 Contig842_x_at Contig842 - - 3e-8 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.02 3e-2 40 Contig838_s_at Contig838 - - 3e-17 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.01 3e-2 40 Contig4729_at Contig4729 - - 2e-30 At1g15500 ATNTT2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-15 85 Arabidopsis thaliana At3g06483 819826 PDK (PYRUVATE DEHYDROGENASE KINASE) Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily. - - - C.G. S.X.
0.17 2e-8 61 Glycine max Gma.3204.1.S1_at AW509002 - - 8e-28 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.63 0 1110 Oryza sativa Os07g0637300 AY026039.1 - Pyruvate dehydrogenase kinase isoform 2 (EC2.7.1.99) 3e-25 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.08 5e-6 54 Populus trichocarpa PtpAffx.11908.1.S1_at CV247410 hypothetical protein - 2e-23 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.79 0 2026 Triticum aestivum Ta.27347.1.S1_at BT009355.1 - - 2e-17 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.23 5e-24 111 Vitis vinifera 1622575_s_at CF512405 hypothetical protein LOC100245923 - 2e-44 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.58 0 827 Zea mays Zm.401.1.A1_at AF038586.1 pyruvate dehydrogenase kinase isoform 2 - 1e-11 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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