Gene omics information

Query gene ID	Contig5710_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	S.X.	H.G.	Please select
0.67	84.7	Contig15782_at	Contig15782	-	-	1e+0	At2g42760	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig9319_at	Contig9319	-	-	3e-3	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	S.X.	H.G.	Please select
0.60	77.3	Contig8797_at	Contig8797	-	-	1e-2	At4g09080	TOC75-IV	S.X.	H.G.	Please select
0.46	61.0	HA03M05u_s_at	HA03M05u	-	-	2e-7	At3g20390	endoribonuclease L-PSP family protein	S.X.	H.G.	Please select
0.46	61.0	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	98.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.3	98.5	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM311259	kara_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.9	97.9	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.8	97.8	GSM311265	kara_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.2	97.4	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.1	97.3	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM311260	kara_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-30	133	Contig11915_at	Contig11915	-	-	9e-3	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.03	8e-14	77	Contig4696_at	Contig4696	-	-	1e-26	At5g26667	PYR6	C.G.	S.X.	Please select
0.02	3e-1	36	Contig2392_at	Contig2392	-	-	1e-31	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig26553_at	Contig26553	-	-	8e+0	At5g66160	JR700	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8218_at	Contig8218	-	-	6e-4	At1g28120	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4578_at	Contig4578	-	-	7e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig3978_at	Contig3978	-	-	3e-14	At3g18660	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Contig10221_at	Contig10221	-	-	6e-1	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-7	56	Arabidopsis thaliana	At4g36910	829844	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	Has a cystathionine Beta-synthase domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	4e-18	93	Glycine max	Gma.1309.1.S1_at	BU084636	-	-	1e-27	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.40	1e-136	488	Oryza sativa	Os08g0313200	AK121969.1	-	CBS domain containing protein	1e-5	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	5e-8	59	Populus trichocarpa	PtpAffx.2709.1.S1_at	CV282172	hypothetical protein	-	1e-36	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	1154	Triticum aestivum	TaAffx.30123.1.S1_at	BJ219066	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.09	5e-11	67	Vitis vinifera	1610920_at	CB979986	hypothetical protein LOC100257224	-	7e-14	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.22	7e-11	67	Zea mays	Zm.8593.1.A1_at	BM341502	cystathionin beta synthase protein	-	2e-6	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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