Gene omics information

Query gene ID	Contig5709_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	S.X.	H.G.	Please select
0.60	77.3	Contig4090_s_at	Contig4090	triticain beta 2	-	4e-7	At5g43060	cysteine proteinase, putative / thiol protease, putative	S.X.	H.G.	Please select
0.44	58.9	Contig11015_at	Contig11015	-	-	1e-29	At4g14147	ARPC4	S.X.	H.G.	Please select
0.44	58.9	Contig8129_at	Contig8129	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	S.X.	H.G.	Please select
0.29	35.5	Contig4091_at	Contig4091	-	-	3e-13	At1g47128	RD21 (responsive to dehydration 21)	S.X.	H.G.	Please select
0.27	32.1	Contig18916_at	Contig18916	-	-	9e-1	At5g09995	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.5	98.6	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.1	98.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-6	54	Contig10310_at	Contig10310	-	-	8e-3	At1g75690	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.02	7e-6	52	Contig13233_at	Contig13233	-	-	5e-1	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	C.G.	S.X.	Please select
0.01	4e-4	46	Contig7613_at	Contig7613	-	-	4e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	C.G.	S.X.	Please select
0.02	4e-4	46	Contig8434_at	Contig8434	-	-	1e-1	At1g74710	isochorismate synthase 1 (ICS1) / isochorismate mutase	C.G.	S.X.	Please select
0.02	2e-3	44	Contig1383_s_at	Contig1383	-	-	5e-9	At3g15353	MT3 (METALLOTHIONEIN 3)	C.G.	S.X.	Please select
0.01	2e-3	44	Contig4578_at	Contig4578	-	-	7e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	C.G.	S.X.	Please select
0.02	2e-3	44	Contig1383_at	Contig1383	-	-	5e-9	At3g15353	MT3 (METALLOTHIONEIN 3)	C.G.	S.X.	Please select
0.02	2e-3	44	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.02	2e-3	44	Contig17054_at	Contig17054	-	-	8e+0	At5g52110	HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-56	220	Arabidopsis thaliana	At2g30200	817570	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	F:binding, transferase activity, [acyl-carrier-protein] S-malonyltransferase activity, catalytic activity;P:fatty acid biosynthetic process, metabolic process;C:chloroplast, chloroplast stroma;BOFMP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	1e-40	169	Glycine max	Gma.704.2.S1_a_at	BE440491	malonyltransferase	-	4e-67	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please select
0.56	0	1049	Oryza sativa	Os03g0297400	AK101597.1	-	Malonyl-CoA:ACP transacylase (EC 2.3.1.39)(Fragment)	6e-20	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	3e-69	264	Populus trichocarpa	Ptp.2916.1.S1_at	DN500305	hypothetical protein	-	5e-128	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	1863	Triticum aestivum	Ta.7488.1.S1_a_at	CK192982	-	-	3e-22	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please select
0.06	1e-6	54	Vitis vinifera	1610627_at	BQ796704	hypothetical protein LOC100245074	-	2e-29	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please select
0.52	0	896	Zea mays	Zm.2208.1.S1_at	CO527853	malonyl CoA-acyl carrier protein transacylase	-	6e-51	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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