Gene omics information

Query gene ID	Contig5696_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig3205_at	Contig3205	-	-	3e-7	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	S.X.	H.G.	Please select
0.57	74.9	Contig3920_at	Contig3920	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	S.X.	H.G.	Please select
0.44	58.9	Contig7366_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	S.X.	H.G.	Please select
0.40	53.1	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.0	98.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.9	98.3	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.1	97.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.4	94.8	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.3	94.6	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1701	Contig5696_s_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig10100_at	Contig10100	-	-	6e-17	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig6148_at	Contig6148	-	-	2e-3	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17469_at	Contig17469	-	-	2e+0	At5g56795	MT1B	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12031_at	Contig12031	-	-	6e-1	At2g22630	AGL17 (agamous-like 17)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig4904_at	Contig4904	-	-	5e-4	At2g34070	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig21187_at	Contig21187	-	-	1e+0	At3g52420	OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7)	C.G.	S.X.	Please select
0.03	3e+0	32	HW09F23V_s_at	HW09F23V	-	-	3e+0	At4g10240	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14988_at	Contig14988	-	-	4e-1	At4g33130	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-3	42	Arabidopsis thaliana	At5g48335	2746200	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.21548.1.S1_at	BE022914	-	-	4e+0	At4g02425	unknown protein	C.G.	S.X.	Please select
0.41	5e-107	389	Oryza sativa	Os02g0609400	AK061315.1	-	Conserved hypothetical protein	2e+0	At4g16240	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	4e-8	59	Populus trichocarpa	Ptp.7216.3.S1_s_at	CX176163	hypothetical protein	-	3e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	1090	Triticum aestivum	Ta.14394.1.S1_at	CK216686	-	-	9e-3	At5g48335	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1620004_x_at	CF204829.1	-	-	5e-3	At1g51080	unknown protein	C.G.	S.X.	Please select
0.31	9e-56	216	Zea mays	Zm.5578.2.S1_a_at	BM380773	hypothetical protein LOC100193656	-	1e-4	At5g48335	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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