Gene omics information

Query gene ID	Contig5692_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig5692_s_at	Contig5692	-	-	6e-12	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	S.X.	H.G.	Please select
0.18	18.2	Contig11307_at	Contig11307	-	-	9e+0	At5g02240	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select
0.17	16.9	HVSMEi0019G12r2_at	HVSMEi0019G12r2	-	-	1e+0	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please select
0.10	8.4	Contig12713_at	Contig12713	-	-	7e-3	At4g01900	GLB1 (GLNB1 HOMOLOG)	S.X.	H.G.	Please select
0.06	4.8	Contig7237_at	Contig7237	-	-	1e-1	At3g42180	catalytic/ transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.02	1.8	Contig15019_at	Contig15019	-	-	3e-11	At3g09320	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.3	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.3	99.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.6	99.2	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.7	99.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.2	99.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.7	98.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	965	Contig5691_at	Contig5691	-	-	6e-3	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.16	5e-11	67	Contig10629_at	Contig10629	-	-	8e-3	At5g52360	ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)	C.G.	S.X.	Please select
0.04	1e-8	59	Contig5009_at	Contig5009	-	-	9e-18	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.14	2e-7	56	Contig7093_at	Contig7093	-	-	3e-2	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.15	2e-7	56	Contig7092_s_at	Contig7092	-	-	2e-2	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.15	2e-7	56	Contig7092_at	Contig7092	-	-	2e-2	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.05	3e-6	52	Contig5010_at	Contig5010	-	-	3e-20	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.05	3e-6	52	Contig5010_s_at	Contig5010	-	-	3e-20	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.02	3e-3	42	Contig22899_at	Contig22899	-	-	7e-1	At1g77180	chromatin protein family	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	6e-12	71	Arabidopsis thaliana	At4g34970	829649	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-15	83	Glycine max	GmaAffx.54969.2.S1_at	AW568433	-	-	4e-25	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.43	3e-120	432	Oryza sativa	Os03g0243100	AK104056.1	-	Actin-depolymerizing factor 5 (ADF-5) (AtADF5)	2e-16	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	5e-10	65	Populus trichocarpa	Ptp.3758.1.S1_at	CV251606	hypothetical protein	-	2e-11	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	7e-15	81	Triticum aestivum	TaAffx.8782.1.S1_at	CA620276	-	-	2e-2	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.04	2e-6	52	Vitis vinifera	1607336_at	BQ800260	hypothetical protein LOC100242532	-	9e-15	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.37	2e-139	494	Zea mays	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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