Gene omics information

Query gene ID	Contig5664_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	S.X.	H.G.	Please select
0.63	80.3	Contig11440_s_at	Contig11440	-	-	1e+0	At1g06475	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig8853_at	Contig8853	-	-	1e-1	At1g19360	-	S.X.	H.G.	Please select
0.50	66.9	Contig660_s_at	Contig660	-	-	1e-37	At1g09200	histone H3	S.X.	H.G.	Please select
0.44	58.9	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select
0.43	56.4	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	S.X.	H.G.	Please select
0.40	53.1	Contig13538_at	Contig13538	-	-	2e+0	At4g36430	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.3	99.6	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
12.4	99.4	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
11.2	99.2	GSM68898	8 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
9.7	99.0	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
9.5	99.0	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
9.3	99.0	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
8.4	98.8	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
8.4	98.8	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
7.8	98.6	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
7.5	98.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	724	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	C.G.	S.X.	Please select
0.25	7e-95	347	Contig20877_at	Contig20877	-	-	5e-6	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	C.G.	S.X.	Please select
0.45	1e-93	343	Contig18311_at	Contig18311	very long chain fatty acid condensing enzyme CUT1;1-like	-	8e+0	At5g18748	unknown protein	C.G.	S.X.	Please select
0.36	1e-74	280	Contig6409_at	Contig6409	-	-	1e-11	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	C.G.	S.X.	Please select
0.16	1e-50	200	HVSMEb0010E16r2_s_at	HVSMEb0010E16r2	very long chain fatty acid condensing enzyme CUT1;1-like	-	1e+1	At4g11190	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please select
0.22	3e-41	169	Contig17547_at	Contig17547	-	-	7e-7	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please select
0.14	3e-35	149	Contig22130_at	Contig22130	-	-	5e-6	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please select
0.10	2e-24	113	Contig4206_at	Contig4206	FIDDLEHEAD very long chain fatty acid condensing enzyme FDH;1-like	-	4e-3	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please select
0.08	2e-21	103	Contig5663_at	Contig5663	-	-	7e-11	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-2	42	Arabidopsis thaliana	At1g25450	839131	KCS5 (3-KETOACYL-COA SYNTHASE 5)	Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-11	71	Glycine max	GmaAffx.73570.1.S1_at	BG316320	-	-	4e-22	At1g01120	KCS1 (3-KETOACYL-COA SYNTHASE 1)	C.G.	S.X.	Please select
0.43	4e-96	353	Oryza sativa	Os02g0731900	9630.m04890	-	Naringenin-chalcone synthase family protein	1e-2	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-2	42	Populus trichocarpa	Ptp.6592.1.A1_s_at	CK319937	hypothetical protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-30	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	4e-104	379	Triticum aestivum	TaAffx.32433.1.S1_at	CA595094	-	-	1e-3	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	C.G.	S.X.	Please select
0.05	2e-7	56	Vitis vinifera	1619011_at	CF208055	hypothetical protein LOC100247295	-	7e-8	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	C.G.	S.X.	Please select
0.26	3e-66	252	Zea mays	Zm.9456.1.A1_at	BM341648	hypothetical protein LOC100191738	-	5e+0	At4g28020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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